Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g2471 ATGGAGGTGAATTTGGGATTAGTGGCGGGATCTCGTAATAGCAACGAATTCATTATCATCGCCCAAGATGGCAATTTTtctttattgtgTTGGCAGAGACCAGAGGTGCATGAGATGTGTGGATGTCAAATATGTGGAGATGAGATAGGGTTAAATGGAGAAGGAGAAGTGTTTGTGGCATGCAATGAGTGTGCCTTCCCTGTGTGTAGAAATTGCTATGAGTATGAGAGAAGGGAAGGAAGCCAATTGTGCCCTCAGTGCAAAACCAGATATAAACGTCTCAAGGggAGTGCTAGAGTTGAGGGAGATGAAGAGGAGGATGATATTGATGACTTGGAGAATGAGTTTGATTTTGATGGAGGCAAAAGGCAGGAAATGCAGCTCTCTCTTTATAATTCTCAACAGGTAGATGATACACCACAAGAACATCATGCTATAGTTCCTTCAAGCATGGGAAAGaataatcaaataattgaaATGCAAATGCAAGCAATAAGACCTATGGATCCTTCCAAGGACTTAGCTGCATATGGCTATGGAAGTATTGCATGGAAGGAAAGGATGGAGATGTGGAAGCAAAAACAAGCCAAGCTTCATCAAACCAGGAAAGAAGATAGCAGTGAAGATCATAAAGATAATAACTTTGAAGATGATGACTCAGAATTCCCACTAATGGATGAAGCAAGACAACCATTATCAAGAAAGATGGCTATTCCATCAAGCCAAATCAATCCTTATcgtattatgataataattaggCTTTTGATTCTTGGATTCTTCTTCTATTACCGCGTAACGCACCCGGTGGACAATGCCTATGCTCTATGGATTGTTGCTGTAATATGCGAGCTATGGTTCGCTCTCTCGTGgattcttgatcaattcccaAAATGGCTTCCAGTTAGAAGAGAAACCTATCTAGATAGGCTCTCCTTAAGGTATGAGAAATATGGCGAGCCTTCGCAACTTCCTCCTATCGATATATTCGTGACAACTTTGGATCCTTTGAAAGAACCTCCTCTAGTGACTGCAAACACAATTCTTTCCATTCTTGCTGTGGATTACCCTCCTGAAAAGGTTTCATGCTATGTTTCTGATGATGGTGCTGCAATGTTAACATTTGAGGCTTTGTCTGAGACTTCTGAGTTTGCAAGGAAATGGGTTCCTTTCTGTAAGAAATTCAATGTTGAACCTAGGGCTCCTGAATGGTATTTTGCAGAGAAGATCAATTACTTGCAAGATAAGGTCCACCCATCATTTGTGAAAGAAAGAAGAGCTATGAAGAGAGAGTATGAAGAGTTTAGAGTTCGAATTAATTCTTTGGTTGCAAAAGCTCGAAAAGTCCCCGAAGAAGGATGGACAATGCAAGATGGAACCATATGGCCCGGAAATAATGTTCGCGACCACCCCGGTATGATCCAGGTTTTTCTAGGCCAATATGGAGGACATGACATGGATGGACATGAACTTCCACGCCTCGTCTATGTTTCGAGGGAAAAGAGGCCTAAATTCAAGCACCATCGGAAAGCCGGAGCTCTGAATGCTTTGGTTAGAGTTTCCGGTGTGCTTTCGAATGCGCCTTATTTGTTGAACTTGGATTGTGATCATTACATAAACAACAGCAAGGCGATTCGAGAAGCAATGTGTTTCATGTTGGATCCATTACAAGGCAAAAGGGTGTGCTATGTTCAATTCTCTCAGAGATTTGATGGTGTTGAAAATGATGACAGATATGTGAATCAAAGTACTGCATTCTTTGATATTAACATGAAAGGCTTGGATGGTATCCAAGGGCCTATATATGTTGGGACTGGATGTGTCTTCAAAAGGCATACATTatatggatttgatgctccaagaaaGAAGAAGGCACCAACTAAGACATGCAATTGCTGGCCTAAGTGGTGTTGTTGTATGTCTTGTTGCTTtgggaagaagaagacgaagaacaAGAAGATGAAGCATTCATTGTTTCAAAAGAAGGATAGTAGTCACAGAAAAGTTCATGCAGAGTCATCAGTGGAAGATTGTGCTTTGAATTCTGTTGAACAAGGAAGCAAAGGAATTGAAGGCCAATTTCTAGCTCCAACCCTTGAGCCAAAGCTGTGGAAGAAATTTGGACAATCACCTGTTTTTATAGCTTCTACTTTACTAGAAGAAGGTGAGAGTGTGAAAGATGTTACTCTGGCTTCTTTGCTTAAAGAAGCCATCCATGTTATTAGTTGTGGCTATGAGGAGAAGACAGAATGGGGAAGAGAGGTTGGGTGGATCTATGGTTCAACCACAGAGGATATACTAACAGGGTTTAAAATGCACTGCCATGGATGGAGATCCATATATTGCATCCCTGAAAGATCTGCATTCAAAGTTTGTGCTCCAAGAAATCTCAGTGATGGTCTTCATAAAGTGTTTAGGTGGGCACTTGGATCCACAGAGATATTGTTAAGCAAACACTGCCCTATTTGGTATGGCTATGGAGGAGGATTGAAGTGGCTTGAACGTTTGTCTTACATAAATGCCACAGTGTATCCATGGACTTCAATTCCTCTGGTGGCATATTGTACTCTTCCTGCTGTTTGCTTGCTCACAGGCAAATTCATTGTTCCTGAGCTAAGTAATTTAGATGGCATGTGGTTCCTCTCCCTTTTCTTCTGCATTTTTGGCACAAGCATACTTGAGATGAGATGGAGTGGAGTCACAATCTCTGAATGGTGGAGAAATGAGCAATTCTGGGTAATAGGAGGAGTTTCCCCCCATTTATTTGCAGTATTCATAGGCATCTTCAAGCTCATAGCAGGTGTTGATGGAAACTTCATATTAAAATCAGAATcagaaaatgatgatgatgacgacaAGAAGGACACTACTTCTGACCTATTTGCATTGAAGTGGACCACTTTGCTAATTATACCCACAACTTTGCTGATTCTGAATCTCATAGCCATAGTTGCAGGAATCTCACATGTCATTAATGGTGGGGTGGATTCATGGGGTCCCCTATTAGGGAAACTATTTTTCTCCTTTTGGGTCATTCTTCATTTGTACCCTTTCCTTAAGGGTATGTTGGGTAGGCATAATAATAGGACTCCCACTATTGTTCTTGTTTGGTCAATCTTGCTTGCTTCTTTCTTCTCTGTTTTGTGGGTCAAAATTGACCCTTTTATGCCCAAATTAAATGGGCCTATTCTAGAAGAGTGTGGATTGGATTGTGATTAA 3216 0.3955 MEVNLGLVAGSRNSNEFIIIAQDGNFSLLCWQRPEVHEMCGCQICGDEIGLNGEGEVFVACNECAFPVCRNCYEYERREGSQLCPQCKTRYKRLKGSARVEGDEEEDDIDDLENEFDFDGGKRQEMQLSLYNSQQVDDTPQEHHAIVPSSMGKNNQIIEMQMQAIRPMDPSKDLAAYGYGSIAWKERMEMWKQKQAKLHQTRKEDSSEDHKDNNFEDDDSEFPLMDEARQPLSRKMAIPSSQINPYRIMIIIRLLILGFFFYYRVTHPVDNAYALWIVAVICELWFALSWILDQFPKWLPVRRETYLDRLSLRYEKYGEPSQLPPIDIFVTTLDPLKEPPLVTANTILSILAVDYPPEKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNVEPRAPEWYFAEKINYLQDKVHPSFVKERRAMKREYEEFRVRINSLVAKARKVPEEGWTMQDGTIWPGNNVRDHPGMIQVFLGQYGGHDMDGHELPRLVYVSREKRPKFKHHRKAGALNALVRVSGVLSNAPYLLNLDCDHYINNSKAIREAMCFMLDPLQGKRVCYVQFSQRFDGVENDDRYVNQSTAFFDINMKGLDGIQGPIYVGTGCVFKRHTLYGFDAPRKKKAPTKTCNCWPKWCCCMSCCFGKKKTKNKKMKHSLFQKKDSSHRKVHAESSVEDCALNSVEQGSKGIEGQFLAPTLEPKLWKKFGQSPVFIASTLLEEGESVKDVTLASLLKEAIHVISCGYEEKTEWGREVGWIYGSTTEDILTGFKMHCHGWRSIYCIPERSAFKVCAPRNLSDGLHKVFRWALGSTEILLSKHCPIWYGYGGGLKWLERLSYINATVYPWTSIPLVAYCTLPAVCLLTGKFIVPELSNLDGMWFLSLFFCIFGTSILEMRWSGVTISEWWRNEQFWVIGGVSPHLFAVFIGIFKLIAGVDGNFILKSESENDDDDDKKDTTSDLFALKWTTLLIIPTTLLILNLIAIVAGISHVINGGVDSWGPLLGKLFFSFWVILHLYPFLKGMLGRHNNRTPTIVLVWSILLASFFSVLWVKIDPFMPKLNGPILEECGLDCD 1071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g2471 1071 MobiDBLite consensus disorder prediction 195 210 - -
Sto4g2471 1071 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 482 621 IPR029044 -
Sto4g2471 1071 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 315 421 IPR029044 -
Sto4g2471 1071 MobiDBLite consensus disorder prediction 195 222 - -
Sto4g2471 1071 CDD mRING-HC-C4C4_CesA_plant 42 90 - -
Sto4g2471 1071 Pfam Cellulose synthase 326 1061 IPR005150 GO:0016020|GO:0016760|GO:0030244
Sto4g2471 1071 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 40 1070 - -
Sto4g2471 1071 SUPERFAMILY Nucleotide-diphospho-sugar transferases 338 845 IPR029044 -
Sto4g2471 1071 SUPERFAMILY RING/U-box 39 114 - -
Sto4g2471 1071 Coils Coil 95 115 - -
Sto4g2471 1071 Pfam Zinc-binding RING-finger 42 108 IPR027934 -
Sto4g2471 1071 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 32 115 IPR013083 -
Sto4g2471 1071 Coils Coil 424 444 - -
Sto4g2471 1071 ProSiteProfiles Zinc finger RING-type profile. 42 88 IPR001841 -
Sto4g2471 1071 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 2 [UDP-FORMING]-LIKE 40 1070 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g2471 Sto-Chr4 26091001 26098319 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g2471 1 1070 Glycosyltransferase AT5G64740 62.950 0.0 1409