Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g2428 ATGAAGTATGACACTATGAATTCACACTACATTGTGCAACAGAGGCTCAAATGGAATATTTCCTTGCAAGATAATATGATAATGCGACTGACTGTTATTCCTGCTTTTCAGGTACCCTTGAAAATAATCAGACAGCACACTATTGTTCTGATCATGGATATAGATCTTAGGTTACCTTCTGGTGACCATGATAAAAGGGATGAAGAACCTAATACAATTGATAACCTGTTGGGTGGTGAAGAAAAATTGCATAATGTAGATATAGAAGGCAGAAGTATGGTTGATGGCAATGTTGAGGTGCATGCTATAGATGGTGGAGATCTTAATTCACCAACGTTGGATATGGTAATATTTAAGGAGGATACAAATCTTGAGCCTCTTTCTGGCATGGAATTTGAGTCTCATGGTGATGCTTATTCTTTCTACCAAGAGTATGCTCGGTCAATGGGATTCAATACTGCAATTCAAAATAGTCGCCGTTCAAAAACATCAAGAGAGTTTATAGATGCAAAGTTTGCTTGTTCCAGATATGGTACAAAACGAGAGTATGACAAATCATTCAATCGACCACGTGCAAGACAGAATAAGCCAGAGTCTGAAAATTCTACTGGTCGGAGATCTTGTTCGAAAACTGATTGTAAAGCAAGCATGCATGTAAAAAGAAGGTCGGATGGAAAATGGGTTATACATAGTTTTGTGAAGGAGCATAATCATGAGCTTTTACCTGCCCAAGCTGTTAGTGAACAAGCACGAAAAATGTACGCTGCAATGGCTAGACAGTTTGCTGAATACAAAAGTGTGGTTGGTCTCAAGAATGAGAAAAACCCATTTGACAAAGGTCGGAATTTGGGCCTGGAGACAGGGGATGCCAAACTTCTGCTTGATTTTTTTATACAGATGCAAAATATGAACTCTAACTTCTTTTATGCAGTTGACATTGGTGAGGATCAGCGGGTGAAAAACCTCTTATGGGTTGATGCTAAAAGTAGGCATGACTATAATAACTTTTGCGATGTAGTGTCTTTCGATACTGCCTATATTAGAAACAAATATAAGATGCCTCTTGCACTTTTTGTTGGAGTGAATCAGCACTATCAATTTATATTGATGGGGTGTGCCTTGATATCAGATGAAACTGCCACAACTTTTTCTTGGTTGATGCAGACATGGCTGAAAGCAGTCGGAGGTCAAGTTCCAAAAGTGATAATTACTGACCATGACAAGACATTGAAGTCAGTTATTTCCGATGTCTTTCCTAACGTTCATCATTGTGTGTGCCTATGGAACATAATGGGGAAGGTATCTGAAAATTTGGCTCATGTCATTAAACGACATGAgaattttaagacaaaatttgaaaaatgcaTCTATAGGTCATGGACGAGTGATGAATTTGAGAAGAGGTGgtggaaaattgttgataagtTTGAACTCCGAGAGGATGAATGCATGCATACATTGTACGAAGATAGCAAGTTATGGGTACCAACATTCATGAGGGATGTATGTTTAGGTGGCATGTCTACTGTCCAGCGTTCTGAAAGTGTAAATTCCTTCTTTGATAAATATGTACATAAGAAGACCACTGTACAAGATTTTGTCAAACAGTATGAAGTAATATTGCAAGACAGGTATGAAGACGAAGCAAAAGCAGATTCTGATACTTGGAATAAAGTGGCAACATTAAAAACCCCTTCACCTTTAGAGAAGAGTGTTGCTGGAATTTACACACATGCAGTGTTTAAGAAAATTCAGGTTGAGGTTATTGGTGCAGTTGCTTGCCATCCTAAAGCTGAAAGACAAGATGATGCAAGCATTACTTACAAGGTCCATGATATGGAAAGGAATCAAGACTTCATAGTTGTGTTGAATGAATTAAAATCAGAGGTTTCTTGTATATGTCGGCTATTTGAATATAGAGGTTATCTTTGTCGCCATGCATTGATTGTTCTTCAATATTCTCGCCTTTCAGCAATCCCATCCCAATATATTTTGAAACGGTGGACAAAAGATGCAAAGTCCAGGCATTTATCTGGAGAAGAATCTGAACATATGCTGACTAGGGTGCAACGGTACAATGATTTATGCCAGCAAGCACTTAAACTGAGTGAAGAAGGATCTCTGTCTCAAGAGAGTTATAGTATTGCATTCCATGCGCTGCACGAAGCATATCCAAGTTGTGTGAGCGTCAACAATTCTAGTAAAGATCCTACAGAAGCTGGCACATCAGCTGGTCATGTTCAACTTTCCATTGAGGAAGATACCCAAAGTAAAAATATGAGCAAgacaaacaaaaagaagaatccggctaaaaagaaaaagTTGAACTCTGAGGCTGAAGTGATGACTGTTGGGGCACAAGACAACTTGCAACAAATGGACAAATTCAGCACAAGGACAGTGACCCTGGATGGTTATTATGGCACTCAACAGAGTGTGCAGGGAATGTTAAACTTAATGGGACCAACGCGAGATAATTACTATGGGAATCAACAGACTATTCAGGGGCTGGGACAATTAAGCTCCATACCATCGAGCCACGATGGTTATTATGGTGCTCATCAGGGTATGCCTGGTCTGGCACAACTGGATTTTTTCCGAGCATCAGCAGGTTTTACATATGGCATTCGGGATGATCCTAATGTAAGAGCAGCACAGTTGCATGAAGATCCATCAAGACATGCATGA 2688 0.3839 MKYDTMNSHYIVQQRLKWNISLQDNMIMRLTVIPAFQVPLKIIRQHTIVLIMDIDLRLPSGDHDKRDEEPNTIDNLLGGEEKLHNVDIEGRSMVDGNVEVHAIDGGDLNSPTLDMVIFKEDTNLEPLSGMEFESHGDAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNRPRARQNKPESENSTGRRSCSKTDCKASMHVKRRSDGKWVIHSFVKEHNHELLPAQAVSEQARKMYAAMARQFAEYKSVVGLKNEKNPFDKGRNLGLETGDAKLLLDFFIQMQNMNSNFFYAVDIGEDQRVKNLLWVDAKSRHDYNNFCDVVSFDTAYIRNKYKMPLALFVGVNQHYQFILMGCALISDETATTFSWLMQTWLKAVGGQVPKVIITDHDKTLKSVISDVFPNVHHCVCLWNIMGKVSENLAHVIKRHENFKTKFEKCIYRSWTSDEFEKRWWKIVDKFELREDECMHTLYEDSKLWVPTFMRDVCLGGMSTVQRSESVNSFFDKYVHKKTTVQDFVKQYEVILQDRYEDEAKADSDTWNKVATLKTPSPLEKSVAGIYTHAVFKKIQVEVIGAVACHPKAERQDDASITYKVHDMERNQDFIVVLNELKSEVSCICRLFEYRGYLCRHALIVLQYSRLSAIPSQYILKRWTKDAKSRHLSGEESEHMLTRVQRYNDLCQQALKLSEEGSLSQESYSIAFHALHEAYPSCVSVNNSSKDPTEAGTSAGHVQLSIEEDTQSKNMSKTNKKKNPAKKKKLNSEAEVMTVGAQDNLQQMDKFSTRTVTLDGYYGTQQSVQGMLNLMGPTRDNYYGNQQTIQGLGQLSSIPSSHDGYYGAHQGMPGLAQLDFFRASAGFTYGIRDDPNVRAAQLHEDPSRHA 895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g2428 895 PANTHER FAR-RED ELONGATED HYPOCOTYLS 3-RELATED 102 832 - -
Sto4g2428 895 Pfam FAR1 DNA-binding domain 140 242 IPR004330 -
Sto4g2428 895 SMART 26again6 630 657 IPR006564 GO:0008270
Sto4g2428 895 MobiDBLite consensus disorder prediction 731 777 - -
Sto4g2428 895 Pfam SWIM zinc finger 626 653 IPR007527 GO:0008270
Sto4g2428 895 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 102 832 IPR031052 GO:0006355
Sto4g2428 895 MobiDBLite consensus disorder prediction 731 757 - -
Sto4g2428 895 Pfam MULE transposase domain 339 431 IPR018289 -
Sto4g2428 895 MobiDBLite consensus disorder prediction 183 212 - -
Sto4g2428 895 ProSiteProfiles Zinc finger SWIM-type profile. 619 655 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g2428 Sto-Chr4 25686515 25689833 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Sto4g2428 FAR1 1.4e-27 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto7g2351 7 29090493 29099428 Sto4g2428 4 25686515 25689833 CCT