Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g2424 ATGCAAGGAGGATCAGGTCAAAGCTCAATGCCTTTTCCTTCAGGATCCATTGATAAGACTAGGGTTTATGATGTTAAACCTCTGCGTAGTTTGGATCCTGTGTTCCCAAATTCAGCTCAAGCTCCTTCCAGTGATGGCACTTGTCCCTCTGGTTTTTCTCCCTTTTTCCCATTTGGTGCACCTCAGGTACCTCAGGCATCTCCTCCTAGGGTTCCCATGCCGACTCCGATACGGGCATATAGAATCCCGGAGCCGGGAGAAGAAACCCCAGCTAGAGCATCCAATGGAGAATCTACTGATAACCAAAAACGTGCAGCATCAAACAAATCCAGATCCTCCCAAAAGAAGGCTAAGAAAAGTCAAGACCTACAAATTGATGTGAGTTCTTTGATAGGCCTTAGCACGAGTGATCGCGAAGAGGGTAACCGGGACGTGGTTAATGTTGTGCTCATGACATTTGATGGGCTTAGGAGAAGGCTCAGCCAACTTGAAGATGCCAAGGAATTGACCCCCGGGTTGGTCAAGCGTGCGGATATGAAAGCTGGGAATGTTTTGATGAGTACGGGGATTCGAACAAACATGAAGAAAAGAATAGGAGGAGTGCCCGGGGTTGAGGTTGGAGACATTTTCTATTTTCGGCTAGAATTGTGTGTTGTTGGGTTGCATAGTCAGTCAATGGGTGGGATTGACTACACGACTATTAGGGGCGAGTATGAGGATGAGGCGGTGGCTTTAGGGATTGTTTCATCCGGAAAATACGATGACCATACTGAGGATAGCAATATTTTGATCTATAGTGGTCAGGGTGGAGAGAAGGGGGATGATCAGAAGTTAGAAAGGGGTAATCTTGCTTTGGATAGAAGTTCACGACGGAAGAACGAAGTAAGAGTCATCCGGGGCATGAAAGATCCTGCGAATCCAAATTCAAAGGTTTATCTCTATGATGGGCTGTATAAAGTCCAAGATACATGGATAGAGAAGGGAAAATCTGGTGGTGGTGTATTTAAGTACAAGTTTGAGAGAATTCCCGGACAGGCCAGCGCCTTTGCTCTTTGGAAATCGATTGAAAAGTGGAAGGCTGGCGTTACCTCTAGGACTGGACTCATTCTTCCAGACATCTCCTCAGGAGCCGAGAAATTTCCGGTATCACTTGTCAATGATGTTGATGGTGAGAAGGCACCCGGTTACTTCACTTATCTACATTCTCTCCGATATTCAAAATCCTCCATCGTGCCACTGGCTCCTGATCGCTGCAACTGTGTTAAAGATTGTGTTCCTGGTGACTTGAACTGCTCTTGCATTCGAAGAAATGAAGGCGATTATCCATATACCGGCAATGGCATTTTAGTGAGTCGGAAGCCGTTGGTTCACGAATGTGGCCCCTTGTGTCAATGTTTTCCTACTTGCAAAAACAGAATATCCCAAACTGGTTTAAAGTACCATATGGAAGTGTTCAAAACGAAGGATAGAGGATGGGGTCTTCGGTCTCTGGATCCTATTCGTGTGGGTACATTTATTTGTGAGTATGCAGGGGAAGTTGTTGACAGAGCCAGAGATAATGATGAGTATGTTTTTGATACAACCCGAaattttaatccattcaagTGGAACTATGAACCTAAGTTACTAGAAGAAGCGAGTACAAATGATGCTAGTGAGGAGTACAATATTCCATCTCCTCTGATTATTAGTGCCAAGAATGTTGGAAATGTGGCTAGATTCATGAACCATAGTTGCTCCCCAAATGTTTTCTGGCAGCCGGTTGTGTATGAAGAAAACAATCAATCCTTCGTTCATATTGTGTTTTTCGCCCTTAGACACATTCCTCCACTGACAGAATTGACGTATGATTATGGGATCGCCGGTTCTGCGGGTAGCAGTGCACCCAAGTGGAGAAGAAAATGCTTATGTGGATCATCAAAATGCCGGGGTTCTTTCGGTTGA 1944 0.4475 MQGGSGQSSMPFPSGSIDKTRVYDVKPLRSLDPVFPNSAQAPSSDGTCPSGFSPFFPFGAPQVPQASPPRVPMPTPIRAYRIPEPGEETPARASNGESTDNQKRAASNKSRSSQKKAKKSQDLQIDVSSLIGLSTSDREEGNRDVVNVVLMTFDGLRRRLSQLEDAKELTPGLVKRADMKAGNVLMSTGIRTNMKKRIGGVPGVEVGDIFYFRLELCVVGLHSQSMGGIDYTTIRGEYEDEAVALGIVSSGKYDDHTEDSNILIYSGQGGEKGDDQKLERGNLALDRSSRRKNEVRVIRGMKDPANPNSKVYLYDGLYKVQDTWIEKGKSGGGVFKYKFERIPGQASAFALWKSIEKWKAGVTSRTGLILPDISSGAEKFPVSLVNDVDGEKAPGYFTYLHSLRYSKSSIVPLAPDRCNCVKDCVPGDLNCSCIRRNEGDYPYTGNGILVSRKPLVHECGPLCQCFPTCKNRISQTGLKYHMEVFKTKDRGWGLRSLDPIRVGTFICEYAGEVVDRARDNDEYVFDTTRNFNPFKWNYEPKLLEEASTNDASEEYNIPSPLIISAKNVGNVARFMNHSCSPNVFWQPVVYEENNQSFVHIVFFALRHIPPLTELTYDYGIAGSAGSSAPKWRRKCLCGSSKCRGSFG 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g2424 647 Pfam SAD/SRA domain 198 345 IPR003105 -
Sto4g2424 647 MobiDBLite consensus disorder prediction 1 121 - -
Sto4g2424 647 MobiDBLite consensus disorder prediction 92 108 - -
Sto4g2424 647 Gene3D - 182 362 IPR036987 -
Sto4g2424 647 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 23 647 IPR025794 GO:0016571
Sto4g2424 647 MobiDBLite consensus disorder prediction 61 79 - -
Sto4g2424 647 SMART G9a_1 194 345 IPR003105 -
Sto4g2424 647 ProSiteProfiles SET domain profile. 480 619 IPR001214 GO:0005515
Sto4g2424 647 SMART preset_2 370 464 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Sto4g2424 647 Gene3D SET domain 363 646 IPR046341 -
Sto4g2424 647 SMART set_7 480 625 IPR001214 GO:0005515
Sto4g2424 647 ProSiteProfiles YDG domain profile. 199 341 IPR003105 -
Sto4g2424 647 MobiDBLite consensus disorder prediction 1 15 - -
Sto4g2424 647 ProSiteProfiles Pre-SET domain profile. 416 477 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Sto4g2424 647 MobiDBLite consensus disorder prediction 36 50 - -
Sto4g2424 647 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH1 15 645 - -
Sto4g2424 647 Pfam SET domain 491 619 IPR001214 GO:0005515
Sto4g2424 647 ProSiteProfiles Post-SET domain profile. 631 647 IPR003616 -
Sto4g2424 647 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 15 645 - -
Sto4g2424 647 SUPERFAMILY PUA domain-like 181 363 IPR015947 -
Sto4g2424 647 SUPERFAMILY SET domain 380 644 IPR046341 -
Sto4g2424 647 Pfam Pre-SET motif 373 472 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g2424 Sto-Chr4 25632757 25634700 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g2424 1 647 Su(var)3-9 homologs AT1G73100 51.825 0.0 693
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Sto4g2424 SAD_SRA 6.9e-45 CL0178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto7g2344 7 28978051 28980027 Sto4g2424 4 25632757 25634700 CCT