Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g2418 ATGAATCAAATGATGAATGAGATTGAAGATGAGAGTCTCCTCAAGCGTCAGACTAGGTCTAATTTTATTGATGAGGGTAATGGAGGAAGTGCTGGTGGGGTTGCCTTGAAGAAAGGGCCATGGACATCTGCTGAAGATGCTATTTTAGTGGACTACGTCAGGAAGCATGGGGAGGGGAACTGGAATGCTGTTCAGAAGCACTCAGGCCTGTCCCGCTGTGGCAAAAGCTGTCGGCTGAGGTGGGCAAATCACCTAAGGCCAAATTTAAAGAAAGGTGCGTTTACTGCAGAAGAAGAGCAGCTAATAGTTGAACTGCATGCCAAGATGGGAAACAAATGGGCACGCATGGCCGCACATttACCTGGTCGGACAGATAATGAGATAAAGAACTACTGGAATACTAGAATCAAGAGGAGGCAACGGGCTGGCTTGCCAACTTATCCTCCTGAAGTGCAATCAATGCAAGAGAGCCAGCATGACCAAAGCAGCGGTGGAATTAACGGTGTTAATAGAGAACCTTATGACTTCCTGGTAAAAAATAGTAATGCTATATTTAACAGCCTGAAGGCTGATCAGGGTGTCTTACCTTATGTTCCTAAGCTTCCTGATATATCTGCTAATAGCATTCTGCTGAAAGGTCTTGGCTCTtctcaaaatagtaattttgcaCCATCAATGTTGCCTCATCATAAGCATCATCGAGAGTCAACAGTGCCATTTCTTGGTTCTGGTGGTATGAACAATAGTGGGTTTTATCCATTTGACCATGTGTGGGACAGTACTTTTGATACGATTGCACAATCATTTGGAATGCAATCTCCTCTTGATCAATGTCCCTCCTCACAGAATTCACTGTGTAACAGCCATTCACTTTCAAATGGCAATTCCTCTGCTTCTAAGCCTTCTTTCGGGGCTGTGAAGTTGGAGCTCCCTTCACTCCAATATCCAGAAACTGATTTAGGTAGCTGGGGTACCTCTCCGCAACCTCCTTTGCCCAAGTCAGTTGATGTTATGATTCAGTCTCTTCCCCCAACTAGTGCGCTGGAGTCAGATTGTTCTTCACCACATAATAGTGGTCTTCTGGATGCTTTACTTCATCAGGCTAAGACTCTAAGCAGTTCGAAGAATCATTATTTTGATCAGAGTTCAAATTCATCTGCTGCAACTCCTGGTGATAGAGCTGACAGTTCCACATTGAATGCGTACGGGACAGAATGGGAAGAATACATTGACCCTGTTTCTCCGTTCGGTGCAACATCAATCTTGAATGAGTTCCCTGCTGTTTGTGccaataaatcctttttggatgAAAGAGCACCTGCTCAGGCTCAGACCTTACAAGGCAGCATCGTGAAAACCGAATCCATTGACCACGATTGGACTCGTAGCAGTGAGGATCAAACGATGTCCATGATGAACATTGCTGGGCCAGATGTGTACCTTACTTCAGATTGGTTTGAGCATGGTTCCTGGGGTGGCAAGAACGAAGCCATCATGACGGATGCTATTGCAACCCTTCTTGGTAATGATTTAGCAACTTCTTCGCCAAGTCAATTATGGGGTCTTGATTCTGGTACATGGAATAACATGCCAGCTGTTTGTCATATGTCTGATCTTCCTTGA 1623 0.4393 MNQMMNEIEDESLLKRQTRSNFIDEGNGGSAGGVALKKGPWTSAEDAILVDYVRKHGEGNWNAVQKHSGLSRCGKSCRLRWANHLRPNLKKGAFTAEEEQLIVELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRRQRAGLPTYPPEVQSMQESQHDQSSGGINGVNREPYDFLVKNSNAIFNSLKADQGVLPYVPKLPDISANSILLKGLGSSQNSNFAPSMLPHHKHHRESTVPFLGSGGMNNSGFYPFDHVWDSTFDTIAQSFGMQSPLDQCPSSQNSLCNSHSLSNGNSSASKPSFGAVKLELPSLQYPETDLGSWGTSPQPPLPKSVDVMIQSLPPTSALESDCSSPHNSGLLDALLHQAKTLSSSKNHYFDQSSNSSAATPGDRADSSTLNAYGTEWEEYIDPVSPFGATSILNEFPAVCANKSFLDERAPAQAQTLQGSIVKTESIDHDWTRSSEDQTMSMMNIAGPDVYLTSDWFEHGSWGGKNEAIMTDAIATLLGNDLATSSPSQLWGLDSGTWNNMPAVCHMSDLP 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g2418 540 PANTHER TRANSCRIPTION FACTOR, PUTATIVE-RELATED 1 536 - -
Sto4g2418 540 CDD SANT 40 85 IPR001005 -
Sto4g2418 540 Pfam Myb-like DNA-binding domain 38 85 IPR001005 -
Sto4g2418 540 Pfam Myb-like DNA-binding domain 91 134 IPR001005 -
Sto4g2418 540 CDD SANT 93 134 IPR001005 -
Sto4g2418 540 SUPERFAMILY Homeodomain-like 36 132 IPR009057 -
Sto4g2418 540 MobiDBLite consensus disorder prediction 280 302 - -
Sto4g2418 540 ProSiteProfiles Myb-like domain profile. 86 136 IPR001005 -
Sto4g2418 540 Gene3D - 37 90 - -
Sto4g2418 540 SMART sant 90 138 IPR001005 -
Sto4g2418 540 SMART sant 37 87 IPR001005 -
Sto4g2418 540 MobiDBLite consensus disorder prediction 376 396 - -
Sto4g2418 540 MobiDBLite consensus disorder prediction 150 166 - -
Sto4g2418 540 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 33 85 IPR017930 -
Sto4g2418 540 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 86 140 IPR017930 -
Sto4g2418 540 ProSiteProfiles Myb-like domain profile. 33 85 IPR001005 -
Sto4g2418 540 MobiDBLite consensus disorder prediction 145 166 - -
Sto4g2418 540 Gene3D - 93 139 - -
Sto4g2418 540 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 1 536 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g2418 Sto-Chr4 25589366 25592857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g2418 35 533 MYB Transcription Factor Family AT3G11440 44.045 3.51e-119 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sto4g2418 Myb_DNA-binding 6.5e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto7g2340 7 28935398 28938793 Sto4g2418 4 25589366 25592857 CCT