Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g2189 ATGCCAGGAAAACCTGAGGTTGAAGATAGGAGGTTTGAAGGGAATTACCCTCAGCCTTGGTGGCGTGGAGTGGAGGAGGAAAATGGCTCAAAATCATCTTCAATAGATCAGCTAAGTGGTTCAGTCGTTAATAATGGTGAAGCCAATGAAGGAGCTGAAAGTGGTGTTGATTTTAATTATCAGACACAGCCTAGGGTTTCACCTTCCATGTCCACAGCTGGTAGGTTTGGTGTCTCTGGTTTGCAATCTTGGATTCTTGAGTTGGAAATCTGTGTTTCGTATGCAGGTGGACAAGTTGGCAAAGAACAACAAAGCATGAAACATGTTTTGTCGCCGAAACCACTTACCATGGACAAACACCTTGGTCCAAATTCTCATGTCGAACTTGTTGGTCATTCAATTGTTTTAACCTCATACCCATACTCAGATGCACAGTATGCTGGAATCTTAACTACTCATGGTCCTCAAACTCTGATAAATCCTCAGTTTTATGGAATGCATCATGCTAGAATGCCATTGCCACTTGAAATGGAAGCAGAGCCTGTTTATGTCAATGCAAAGCAGTATCATGGTATTTTAAGGCGAAGGCAGTCACGTGCTAAGGCTGAGCTCGAAAAAAGAATTGTCAAAGTTAGAAAGCCATATCTTCACGAATCCCGTCACCTCCATGCTATGAGAAGAGCAAGGGGTTGTGGGGGTCGCTTTCTAAATACGAAGAAGTCGGAAAGTAATAATCCCAATGTCACTCTCGAAAAAGGCAAGAACGCCGATTCAAACCCCTCCTCAGCCATACCTGGCAGCCTGCTTACCTCTGAACACACACATACCAAAAATGAGAATTTCTGTTCATCAAACTATCAGCATGATATATCGGTGTTTCGGCACGCTCATGGTGGAGATGAAGGTCTGTCTCATCCAGCTTTGGAGGAAAGCACCCTCATGATGCAGTATGTCTCAGGCAACTCATTCTTGGCTCAGCTACTTCTGGTTAAAGTGGGTGAGATCATTCTGTTTGGTCTCCCCTTGCTTTGTGAACGTGAGTACTTCAATCTGGATTTGTTGCTTAATGCTTACTAA 1077 0.4373 MPGKPEVEDRRFEGNYPQPWWRGVEEENGSKSSSIDQLSGSVVNNGEANEGAESGVDFNYQTQPRVSPSMSTAGRFGVSGLQSWILELEICVSYAGGQVGKEQQSMKHVLSPKPLTMDKHLGPNSHVELVGHSIVLTSYPYSDAQYAGILTTHGPQTLINPQFYGMHHARMPLPLEMEAEPVYVNAKQYHGILRRRQSRAKAELEKRIVKVRKPYLHESRHLHAMRRARGCGGRFLNTKKSESNNPNVTLEKGKNADSNPSSAIPGSLLTSEHTHTKNENFCSSNYQHDISVFRHAHGGDEGLSHPALEESTLMMQYVSGNSFLAQLLLVKVGEIILFGLPLLCEREYFNLDLLLNAY 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g2189 358 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 180 235 IPR001289 GO:0003700|GO:0006355
Sto4g2189 358 PANTHER TRANSCRIPTION FACTOR Y SUBUNIT A-1, PUTATIVE-RELATED 101 274 - -
Sto4g2189 358 MobiDBLite consensus disorder prediction 237 265 - -
Sto4g2189 358 MobiDBLite consensus disorder prediction 1 15 - -
Sto4g2189 358 Gene3D - 179 239 - -
Sto4g2189 358 MobiDBLite consensus disorder prediction 27 48 - -
Sto4g2189 358 ProSiteProfiles NF-YA/HAP2 family profile. 178 238 IPR001289 GO:0003700|GO:0006355
Sto4g2189 358 SMART cbf3 177 238 IPR001289 GO:0003700|GO:0006355
Sto4g2189 358 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 101 274 IPR001289 GO:0003700|GO:0006355
Sto4g2189 358 MobiDBLite consensus disorder prediction 233 265 - -
Sto4g2189 358 ProSitePatterns NF-YA/HAP2 subunit signature. 183 203 IPR018362 GO:0003677|GO:0016602
Sto4g2189 358 MobiDBLite consensus disorder prediction 1 63 - -
Sto4g2189 358 PRINTS CCAAT-binding transcription factor subunit B signature 181 203 IPR001289 GO:0003700|GO:0006355
Sto4g2189 358 PRINTS CCAAT-binding transcription factor subunit B signature 212 235 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g2189 Sto-Chr4 23346080 23350028 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Sto4g2189 CBFB_NFYA 2.5e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto4g2189 4 23346080 23350028 Sto4g2189 4 23346080 23350028 ECH