Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g2134 ATGAGTGTTTTGTATAGTCCCAACACTCTCAAGTACTCCGAAACAGAGCTGAGGAGAAACCCAGAAATGGATTCCATTCCTCACCTCAATTCCGGGTTGTTGAGGTACCGATCCGCTCCAAGCTCACTTCTGACGAGTCTTCTTAATGAGGAAGCTTCTAGAATTGTCGATCATCGTCACCGTCGTCCATCCACGAGTTCGGAAATGGAAGCCATGTTGGCCAAGTTGGTCTCTTCATCAAACAATGGGTGGATGATGAAGCAGGAAGAAACAGGGGACTCTGTTTCAGAGGGGCATAATGGGTATAATTCTAATTCTTATGGTTCTCAGGTAATTTACCACTCTCAGGCTCAGCAAGGGAATAGTGGTTTTGATGGATCATTGAGTTCCAATGAGGCCAAATTGGGATGTAATGATCTGATTAGGCAGAATGGACTATTCAACAATCCCTCACTTGAAAATGGTTTTGCAGCATGGAGAGATGTGGGGAACTTTAGGGCATGTGATGTCTCAAATGGTCAAGCTTCTACATCATCAACAAGTGGTTTGAATGGTACAACTACAAATCTAGCCTTCTCTTCAAGGCCATCCTCTTGCTCCACACATTTGCCTCAAATTGctgagaatgggaatgaaacCCTAGAAGAAGCACCTTGTGTTGAAGCCAGAAATGACAATGGCAGCAATGGCAAATCATCATCCTATATGCCCAACTTCACAAGTGACTTTTGGGACAATGATGAAATCATGTTTCCTACTTCAGAAGCTTTTGAAACTCAGaATGCAGATTTTGGGTATCAAAATGTTGGTTTAACTCGTCATCTGAGTCTgcctacttcttcttcttcaaagctGAGTTCCATAGAGAAGTTTCTTCATCTTCAAGGTTCTGTTCCTTGTAAGATTCGAGCCAAAAGAGGCTTTGCTACTCACCCAAGGAGCATTGCAGAAAGAGTGAGAAGGACGCGAATTAGTGAAAGAATAAAAAAGCTGCAAGATCTTTTTCCAAAATCAGACAAGCAAACAAGCACAGCAGATATGTTGGATTTGGCAGTTGACTATATCAAGGACTTGCAGAAACAAGTTCAGGTACTCTCAGATACAAAGGCAAAATGCAAGTGTTCAAGTAATTAG 1134 0.4065 MSVLYSPNTLKYSETELRRNPEMDSIPHLNSGLLRYRSAPSSLLTSLLNEEASRIVDHRHRRPSTSSEMEAMLAKLVSSSNNGWMMKQEETGDSVSEGHNGYNSNSYGSQVIYHSQAQQGNSGFDGSLSSNEAKLGCNDLIRQNGLFNNPSLENGFAAWRDVGNFRACDVSNGQASTSSTSGLNGTTTNLAFSSRPSSCSTHLPQIAENGNETLEEAPCVEARNDNGSNGKSSSYMPNFTSDFWDNDEIMFPTSEAFETQNADFGYQNVGLTRHLSLPTSSSSKLSSIEKFLHLQGSVPCKIRAKRGFATHPRSIAERVRRTRISERIKKLQDLFPKSDKQTSTADMLDLAVDYIKDLQKQVQVLSDTKAKCKCSSN 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g2134 377 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 24 376 - -
Sto4g2134 377 Pfam Helix-loop-helix DNA-binding domain 314 359 IPR011598 GO:0046983
Sto4g2134 377 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 310 372 IPR036638 GO:0046983
Sto4g2134 377 SMART finulus 314 364 IPR011598 GO:0046983
Sto4g2134 377 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 24 376 - -
Sto4g2134 377 Gene3D - 310 376 IPR036638 GO:0046983
Sto4g2134 377 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 308 358 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g2134 Sto-Chr4 22799649 22803394 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto4g2134 HLH 1.4e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto4g2134 4 22799649 22803394 Sto7g2060 7 26223026 26228025 ECH
Sto4g2134 4 22799649 22803394 Sto4g2134 4 22799649 22803394 ECH