Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1668 ATGGCACAAGATACTAATTCTATTGCTGAATCAGCACCTAGACGTTCTGGTCTACTGCGAGATCAGGTTCAGCTAGTAAAAAGAAAGGACTCTGATCGCTATGAAATTGTCCCAGTTCAAGATCCCTTGTCATTTGAGAAAGGTTTCTTCATAGTCATTCGTGCATGCCAATTGCTTGCACAAAagaatgatgggataatattaGTAGGAGTTGCAGGTCCCTCTGGAGCAGGAAAGACTGTTTTCACTGAGAAGGTCCTCAACTTTATGCCAAGTGTCGCTGTCTTAACAATGGACAACTATAATGATTCTAGTCGAATTATAGATGGTAACTTCGATGACCCCCGATTGACGGATTATGATACCTTGCTCGAAAATGTACAGGGTCTTAAAGCAGGGAAATCAGTTCAGGTTCCGATATATGATTTCAAATCTAGCTCTCGCATAGGTTACAGGACCGTTGAAGTCCCTAGCTCCCGTATTGTCATCATAGAAGGAATCTATGCCTTAAGTGAAAGACTACGACCTTTGCTTGATCTTCGTGTGTCTGTCACTGGTGGAGTTCACTTTGACCTTGTTAAGCGGGTTTTGCGAGACATTCAACGTGCTGGTCAAGAGCCTGAAGAAATCATTCATCAAATCTCTGAAACGGTTgtataTCCTATGTATAAGGCTTTTATTGAGCCAGATCTGCAAACAGCACatataaaaatcataaataagtTTAATCCATTCTCAGGATTCCAGAATCCCACCTACATACTGAAGTCAACAAGAGCTGTGACAGTGGATCAAATTAAGGCTGTTATTGCTGCAGAACATACTGAAACCACAGAAGAAACATATGACATTTATCTTCTACCACCTGGGGAAGATCCTGAAGCATGTCAATCATATTTGAGGATGAGAAACCGGGATGGAAAATACAATCTTATGTTTGAGGAATGGGTTACGGACAGTCCATTCATAATATCACCAAGAATTACTTTTGAGGTCAGTGTGCGCCTTCTTGGAGGGCTGATGGCCTTAGGGTACACAATTGCAGCTATCCTGAAAAGAAGCAGCCACATCTTTTCTGATGATAAAGTGTGTATAAAAACCGATTGGTTAGAACAACTTAATCGTCTATATGTCCAGgTGCAAGGGAAAGATAGAAACTATGTCAAATATGTGGGAGAGAAGCTGGGGTTGGATGGTTCATATGTTCCTCGCACTTACATTGAACAAATTCAGCTAGAAAAGCTTGTAAACGATGTGATGGCACTGCCAGATGATTTGAAGACAAAACTCAGCATCGATGATGATTTAGTTTCAAGTCCCAAAGAAGCCCTCTCCAGAGCTTCTGCAGATAGGAGAAATAAGTATCTTAACCGTAGTGTTTCTCACTCTTTTTCAAGTCAAAGGGACAAGACTCTATCCAAGTTGACTAGACTAGCTATAAATAACAGAAGGTTTGATGGGCGAGCTTTAGAATCACCTGCAACAGTTACAAACCAAGGAGTCATTACTCAACTTTCTGATCAAATTTCCACATTAAATGAGAGAATGGATGAGTTCACTTCTCGTATTGAAGAGCTGAATTCGAAGTTTGCAGCCAGAAAAGTCTCAGCCAGTCAACAAAACTTGGCTGTACAGGCTGAAGCCTGCAATGGATCTGGACCCACTTCTCTCTTCGTGACAGGGTTGGGTAATGGGTCGTTGACTGGTTCACTGTTGCCTAAATCCTCATCATCTTCCCAATTGGCAAGGGAGCCTCCCCTGATGGAAGAGGTTTTACTTATTGCCCGGAGTCAACGTCAAATCATGCACCAATTAGACACTCTGAGCAATCTTCTTCATGAATACTGTGGACAAAGATCACACCTAGGAAGAGCAGAACAGACTAGCAGAACTCGAGAAGTTGACTTCGCCATCCCGCTGGTTTTGACTCTGGCAATTGGCGCTGCAGGTGTCTTTTTGTTCAAGGGTTTCACAACCCCAAAATGa 1986 0.4159 MAQDTNSIAESAPRRSGLLRDQVQLVKRKDSDRYEIVPVQDPLSFEKGFFIVIRACQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNFMPSVAVLTMDNYNDSSRIIDGNFDDPRLTDYDTLLENVQGLKAGKSVQVPIYDFKSSSRIGYRTVEVPSSRIVIIEGIYALSERLRPLLDLRVSVTGGVHFDLVKRVLRDIQRAGQEPEEIIHQISETVVYPMYKAFIEPDLQTAHIKIINKFNPFSGFQNPTYILKSTRAVTVDQIKAVIAAEHTETTEETYDIYLLPPGEDPEACQSYLRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVSVRLLGGLMALGYTIAAILKRSSHIFSDDKVCIKTDWLEQLNRLYVQVQGKDRNYVKYVGEKLGLDGSYVPRTYIEQIQLEKLVNDVMALPDDLKTKLSIDDDLVSSPKEALSRASADRRNKYLNRSVSHSFSSQRDKTLSKLTRLAINNRRFDGRALESPATVTNQGVITQLSDQISTLNERMDEFTSRIEELNSKFAARKVSASQQNLAVQAEACNGSGPTSLFVTGLGNGSLTGSLLPKSSSSSQLAREPPLMEEVLLIARSQRQIMHQLDTLSNLLHEYCGQRSHLGRAEQTSRTREVDFAIPLVLTLAIGAAGVFLFKGFTTPK 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1668 661 SUPERFAMILY CYTH-like phosphatases 262 409 IPR033469 -
Sto3g1668 661 PRINTS Uridine kinase signature 66 83 - -
Sto3g1668 661 PRINTS Uridine kinase signature 133 148 - -
Sto3g1668 661 PRINTS Uridine kinase signature 189 199 - -
Sto3g1668 661 PRINTS Uridine kinase signature 226 239 - -
Sto3g1668 661 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 59 238 IPR027417 -
Sto3g1668 661 Gene3D - 256 415 - -
Sto3g1668 661 ProSiteProfiles CYTH domain profile. 250 412 IPR023577 -
Sto3g1668 661 PANTHER URIDINE KINASE 6 649 - -
Sto3g1668 661 CDD UMPK_like 68 241 - -
Sto3g1668 661 PANTHER URIDINE-CYTIDINE KINASE C-LIKE ISOFORM X1 6 649 - -
Sto3g1668 661 Gene3D - 67 249 IPR027417 -
Sto3g1668 661 Coils Coil 502 529 - -
Sto3g1668 661 Pfam CYTH domain 274 406 IPR023577 -
Sto3g1668 661 Pfam Phosphoribulokinase / Uridine kinase family 69 238 IPR006083 GO:0005524|GO:0016301
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1668 Sto-Chr3 12740486 12748579 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1668 67 366 PRT Gene Family AT5G40870 24.679 2.55e-16 80.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g2643 6 33486936 33501991 Sto3g1668 3 12740486 12748579 CCT
Sto3g1668 3 12740486 12748579 Sto12g1012 12 6297863 6301535 ECH
Sto3g1668 3 12740486 12748579 Sto3g1668 3 12740486 12748579 ECH