Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1417 ATGGATTTCTCTATGGATTCACCACATCATTGGCTACAGGGGACAAGTATGGAAGAAGTGGAGGAATGTGGGATAATGGAATCCCTATGTACACCGTCTGCATCGGGCATAGTGGAAAGAAGGGTGAGACCCCCACAGGAGCAAGCAGTGAAGTGTCCGAGGTGTGATTCGAGCAACACCAAATTCTGTTACTACAACAACTACAGTTTGTCTCAGCCCAGGTACTTCTGCAAGACATGTCGTAGGTATTGGACCAAAGGAGGCACTCTCAGGAACATCCCCGTCGGAGGTGGCTgcagaaagaacaaaaaaatctCCTCCAACAAGAAATCCAACCCTCACATTaatcacaacaacaacaacaacaacgacGTCGTTCCGCCCAATAATAAGCTGCCTCCTCCTCATCTTTATGAGCCTAATATGGGCCTAATGCTGGACCACTTCCATTCcccatttaataataataatgggttATTACTGGGCCCGAATTTCCAGGGGTTTGGGGGTAAttttaattacaattataattacaatttggGGTCATTTGATGATGCCTACAATAGTAATTACGTAATGGACTACTCCTCGTCATCTTCTAGCCAGCAGAGACTGATGGTGCCACCACATGATGATCACCATAATGAGGAACAATTATTAAATGTGGGTGGAATAatgattgatgatgatgatgatgtgaagCCAAATCCTAAGATATTGGCTCTCGAATGGCAAGATAATGTCCAAGGTTGTTCTGATGTCGGGAAACAGCCTTTTGGTGGCTATATGGGAATGGGAGGTCTAGGATCATCATGGACTGGCATGATCAACGGTTATGGTTCCTCCACCACAAACTCCTTCCtctaa 867 0.4002 MDFSMDSPHHWLQGTSMEEVEECGIMESLCTPSASGIVERRVRPPQEQAVKCPRCDSSNTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKISSNKKSNPHINHNNNNNNDVVPPNNKLPPPHLYEPNMGLMLDHFHSPFNNNNGLLLGPNFQGFGGNFNYNYNYNLGSFDDAYNSNYVMDYSSSSSSQQRLMVPPHDDHHNEEQLLNVGGIMIDDDDDVKPNPKILALEWQDNVQGCSDVGKQPFGGYMGMGGLGSSWTGMINGYGSSTTNSFL 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1417 288 PANTHER DOF ZINC FINGER PROTEIN DOF5.6-LIKE 20 171 - -
Sto3g1417 288 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 20 171 IPR045174 GO:0003700|GO:0006355
Sto3g1417 288 ProSitePatterns Zinc finger Dof-type signature. 52 88 IPR003851 GO:0003677|GO:0006355
Sto3g1417 288 ProSiteProfiles Zinc finger Dof-type profile. 50 104 IPR003851 GO:0003677|GO:0006355
Sto3g1417 288 Pfam Dof domain, zinc finger 48 104 IPR003851 GO:0003677|GO:0006355
Sto3g1417 288 MobiDBLite consensus disorder prediction 111 127 - -
Sto3g1417 288 MobiDBLite consensus disorder prediction 101 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1417 Sto-Chr3 10352055 10353453 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1417 32 108 C2C2-Dof Transcription Factor Family AT5G60200 75.325 8.67e-36 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Sto3g1417 zf-Dof 1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1417 - - spen:107012876 179.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1417 3 10352055 10353453 Sto12g0789 12 4948477 4949757 PCT