Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g0586 ATGAAGCAGGGGCCTAGTGCTAGTGGCACTGATACAAATCAGCAGGCGGCTTCCTTGAATCATGTGCAAAATGCAGTAGATACTCGATTGTCGGATTATAAGGGCTCTGTTGGTGAGACGGCATGTTTATGTATTACTAATCCCGATGTTCAGAGACTCAATAACTGGATTAATACTGGTGAATCAAGTTCCAGACTGGATCTGCACAGCCAAGTCAATGATGATGGGCTAAAAGCAGAGCATGGCTGGTCCTCATCATGTAATGCTCCTGCTGATGGACCAGAAGAAAGGCAATTCAAACCAGATAAtgtaatttttccttttcatcCTAATATTAATTTCCATGGGGATCAATCCAGTATTCATCAGCCTTACCCTTGTAAAGGTTCCAGCTCAACTCCAAATTTGAATCTAAATATGGGGCAAATTGCCAATATTGCTAACCGCGGGAAGGGCACAGAAACTGATGGAGGTGTTGATATACACAATGCTAATAGGTTAGAAAGAGAGCATCCATCATTTGGAAGTACTTCATGTGATGATATAGGAACTTCATTTGGAAGCTCTCGTAACATGGTTTGGGGAGATAATGCAAGTTCAAGTTCTTCTTTAGTAAATTGGAGTTCTTCCTGCAAGAGAAAGGCCCTTGAAGATAGTTCTGGGCTCCAGTGTACTGGAGGAAGCTCAAGCTTTCTTGCAGAATCTGAAAACAGTTCCCGGCCTGCTGGTCCTTCTTCTAATGCTTCCACTAGTTCAAGTGTTTCAACACCTTCAGAGGATGCTCCTACAACTAGTACTTCATTTCAGCATAACCCAGGAAATGAAGTTTGGCAAGCTCCTTCTGAAGATTTTCCTTTGCCTAGTGTTGCAAGAGACATGGAAAGGAATTCTTATCATTCTTCTCTCCATCAAATTTCTATCTCTAACTCATTTGATGATTCTCTGGAATTGAGGTTGACAGCTGGAGTAACAGTAGCAAATTCTGGTGCTCCTCAGAGCCAGTCACTTGCTGTGCATGTTCCTGGTTTGTCATTGAACGCAGTTTCTTTTCCTTGTTATGGAGCTGCTAATCCAAGAGGGGCCTCTTCGTCTACATCTTATGAATCTAGAGAAAGAGCAGTGCGGGATGAATCGAACTTAAGTATCCCCCCAAGAGACAATACTGAGCATCACATGTTTGTGCCTGCACCCTTGGGACAAGCCCCCGCACTATGGCATATATCCTCTTTGAATGCAAACGATTCTGGAGCTTTACCTCTCACATCTCAGATGGGATCTGGTGCAAGTACCCAGTTATTTAGTCCCACTTGGATTGTCAACAGTGAAGTCCCAATGCAGAATCTACAAAGATTATCAGAGTTTCGGTCCCTTTCTCAATCTGATGTTCATAATGGCCACTCTACCTCATTGCCATTGCCTTCTGTTCGTGCTGCTTCCACTCAAGACACTAGCAACCCCCAATCATATGTAAGATCAGCATCATTGATGGGGAGAAGGGGTGAAGATGTTTTCAGTTCTCCCAGTTCATTGCGAGCTTTTGCTTCTGACAATGAGGGAAGGCGCCGTCTAATATCTGAGATTCGGCAAGTCTTGAATGCAATGCGTAGGGGTGAGAACATACAAGCACAGGATGGTTTGCTCTTTGACCCTTCCATACTGCAAGTTCATGGTATGGCTGAATTGCATGACAGACACAGAGACATGCGCCTTGATGTTGATAACATGTCTTATGAGGAATTGTTGGCATTAGAGGAGCGCATAGGAGATGTGAACACTGGATTAAGTGAGGATATCATTATGAAGTCGATGAAAGAGCGAGTTTATGTGCCTGTCATGTCGGGCTCATCTTCAGATCTGGAACCTTGCTGTATCTGTCAGGAGGAATATGTTGATGGAGAGCATGTTGGTTCACTGGATTGTGGCCATGAATTTCACATAAACTGCATCAAAAAGTGGCTAATGCTGAAGAACCTTTGCCCCATATGCAAAATAAAAGCCTTAGGAATAAACAAATAA 2016 0.4306 MKQGPSASGTDTNQQAASLNHVQNAVDTRLSDYKGSVGETACLCITNPDVQRLNNWINTGESSSRLDLHSQVNDDGLKAEHGWSSSCNAPADGPEERQFKPDNVIFPFHPNINFHGDQSSIHQPYPCKGSSSTPNLNLNMGQIANIANRGKGTETDGGVDIHNANRLEREHPSFGSTSCDDIGTSFGSSRNMVWGDNASSSSSLVNWSSSCKRKALEDSSGLQCTGGSSSFLAESENSSRPAGPSSNASTSSSVSTPSEDAPTTSTSFQHNPGNEVWQAPSEDFPLPSVARDMERNSYHSSLHQISISNSFDDSLELRLTAGVTVANSGAPQSQSLAVHVPGLSLNAVSFPCYGAANPRGASSSTSYESRERAVRDESNLSIPPRDNTEHHMFVPAPLGQAPALWHISSLNANDSGALPLTSQMGSGASTQLFSPTWIVNSEVPMQNLQRLSEFRSLSQSDVHNGHSTSLPLPSVRAASTQDTSNPQSYVRSASLMGRRGEDVFSSPSSLRAFASDNEGRRRLISEIRQVLNAMRRGENIQAQDGLLFDPSILQVHGMAELHDRHRDMRLDVDNMSYEELLALEERIGDVNTGLSEDIIMKSMKERVYVPVMSGSSSDLEPCCICQEEYVDGEHVGSLDCGHEFHINCIKKWLMLKNLCPICKIKALGINK 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g0586 671 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 297 - -
Sto2g0586 671 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 297 667 - -
Sto2g0586 671 MobiDBLite consensus disorder prediction 358 387 - -
Sto2g0586 671 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 587 667 IPR013083 -
Sto2g0586 671 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 297 IPR045191 GO:0061630
Sto2g0586 671 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 297 667 IPR045191 GO:0061630
Sto2g0586 671 MobiDBLite consensus disorder prediction 218 276 - -
Sto2g0586 671 SMART ring_2 622 662 IPR001841 -
Sto2g0586 671 MobiDBLite consensus disorder prediction 218 285 - -
Sto2g0586 671 CDD RING-H2_TTC3 621 663 - -
Sto2g0586 671 Pfam Ring finger domain 622 663 IPR001841 -
Sto2g0586 671 MobiDBLite consensus disorder prediction 369 384 - -
Sto2g0586 671 MobiDBLite consensus disorder prediction 459 487 - -
Sto2g0586 671 SUPERFAMILY RING/U-box 621 665 - -
Sto2g0586 671 ProSiteProfiles Zinc finger RING-type profile. 622 663 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g0586 Sto-Chr2 4958675 4961783 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto2g0586 3 667 C3H Transcription Factor Family AT2G15530 32.070 3.09e-82 273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto2g0586 2 4958675 4961783 Sto2g0586 2 4958675 4961783 ECH
Sto2g0586 2 4958675 4961783 Sto10g0269 10 2168095 2173157 ECH
Sto5g1170 5 7860039 7863605 Sto2g0586 2 4958675 4961783 ECH
Sto9g3542 9 34435145 34438460 Sto2g0586 2 4958675 4961783 ECH