Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g0581 ATGGCTCAGCTTCAGGTTCAGCCTCAGAATGCGATTCCGGGGGCTAACGGTACTGCTGCTGCGACCGGGGCTAACGGTACTGCTGCTGCGACCGGTGGGGCGAACCAGTTTGGGGTTTCGTCGCTATATGTTGGGGATCTTGACATGAACGTCACGGACTCGCAGCTATATGACCTGTTTAACCAAGTGGGTCAGGTCGTGTCTGTTAGGGTTTGTAGGGATTTGACTAGCCGGAGATCACTTGGTTATGGTTATGTCAATTTTGGCAATGCGCAAGATGCTGCTAGAGCATTGGATATGCTGAACTTCACTCCTCTCAATAACAAGCCCATTCGGATCATGTATTCACACCGTGATCCTAGTGTTCGCAAAAGTGGGGCaggaaatatatttattaagAATCTGGACAAGGCAATTGACCACAAAGCATTACATGACACCTTTTCTGCATTTGGGAATATCCTTTCTTGCAAGGTAGCTACAGACTCATCTGGTCAATCAAACGGGTATGGCTTTGTACAATTTGATAATGAGGAATCTGCTCAAAGAGCCATAGAGAAGCTAAATGGTATGCTGTTGAATGATAAACAAGTGTATGTTGGACCCTTCCTTCGCAAGCAAGAGAGAGACAGTGTAGTTGACAAGGCAAAATTTAACAATGTTTTTGTAAAGAACCTATCAGATTCAACCAGTGATGAAGATTTGAAGAAGATTTTTGGTGAATTTGGAACAATTACTAGTGCTGTTGTCATGAGGGATGGGGATGGGAAGTCAAAGTGCTTTGGGTTTGTAAACTTTGAGAATGTTGATGATGCTGCTAGGGCTGTTGAGGCCCTTAATGGGAAAAAAATTGATGACAGGGAATGGTACGTTGGTAAAGCACAAAAGAAATCTGAAAGGGAACTTGAATTGAAAGTTCGATTTGAGCAGAGCATGAAAGAAGCAGCAGATAAATATAAAGGGGCTAATTTGTATGTAAAAAATTTAGACGATGGCATTAGTGATGATAAATTTAAAGAGCTCTTCACTCCTTTTGGTACCATTACCTCATGCAAGGTTATGCGAGATCCAAATGGGATAAGTCGAGGATCAGGATTTGTTGCATTCTCAACACCTGAGGAGGCATCTAGAGCACTCTTGGAGATGAATGGCAAAATGATTGTAAGCAAACCTCTGTATGTAGCTCTAGCCCAACGAAAAGAAGATAGAAGAGCTAGATTGCAGGCTCAGTTTTCTCAGATGCGGCCTGTTTCAATGGCATCTTCTGTTGCTCCCCGCATGCCAATTTACCCCCCTGGTGGTCCGGGCATTGGACAACAAATATTTTATGGCCAAGCTCCTCCTGCTATCATTCCTTCCCAGCCTGGATTTGGGTATCAGCAACAACTAGTACCTGGTATGAGGCCTGGCGGGGCTCCTATGCCAAATTTCTTTGTTCCAATGGTTCAGCAGGGGCAACAGCGGCAGCGTCCTGGTGGAAGACGTGGTGGAGGGGCAGTCCAGCAGGGCCAACAGCCACTCATGCAGCAGcagATGCTTCCAAGGGGACGCGTTTACCGTTATCCTCCTGGTAGGAACCTGCCTGATGTTTCCATGCCTGGGGTTGCTGGAGGCATGTTTTCTGTTCCGTATGATGTGGGCGGAATTCCACTGCGCGATGCGGCACTACCGCAACAAATTCCTGTAGGGGCTTTGGCTTCTGCCTTGGCAAATGCTACACCTGAGCAGCAGAGGACGATGCTGGGTGAGAATCTCTATCCTCTTGTGGAACAGTTGGAGCCTGATAATGCTGCTAAAGTGACCGGCATGCTTCTGGAGATGGACCAGACTGAGGTTCTACACTTGCTCGAGTCGCCGGATGCTCTGAAAGCAAAGGTGGTTGAGGCAATGGATGTCCTTAGGAATGTTGCTCAGCAGCAGGCTGGCAATGCAGCTGATCAGCTTGCCTCATTATCACTTGGTGACAACCTTGTTTCTTGA 1980 0.4652 MAQLQVQPQNAIPGANGTAAATGANGTAAATGGANQFGVSSLYVGDLDMNVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNFGNAQDAARALDMLNFTPLNNKPIRIMYSHRDPSVRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDSSGQSNGYGFVQFDNEESAQRAIEKLNGMLLNDKQVYVGPFLRKQERDSVVDKAKFNNVFVKNLSDSTSDEDLKKIFGEFGTITSAVVMRDGDGKSKCFGFVNFENVDDAARAVEALNGKKIDDREWYVGKAQKKSERELELKVRFEQSMKEAADKYKGANLYVKNLDDGISDDKFKELFTPFGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKMIVSKPLYVALAQRKEDRRARLQAQFSQMRPVSMASSVAPRMPIYPPGGPGIGQQIFYGQAPPAIIPSQPGFGYQQQLVPGMRPGGAPMPNFFVPMVQQGQQRQRPGGRRGGGAVQQGQQPLMQQQMLPRGRVYRYPPGRNLPDVSMPGVAGGMFSVPYDVGGIPLRDAALPQQIPVGALASALANATPEQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPDALKAKVVEAMDVLRNVAQQQAGNAADQLASLSLGDNLVS 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g0581 659 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 324 392 IPR000504 GO:0003723
Sto2g0581 659 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 112 IPR000504 GO:0003723
Sto2g0581 659 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 221 289 IPR000504 GO:0003723
Sto2g0581 659 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 130 198 IPR000504 GO:0003723
Sto2g0581 659 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 128 200 IPR000504 GO:0003723
Sto2g0581 659 SUPERFAMILY PABC (PABP) domain 502 652 IPR036053 GO:0003723
Sto2g0581 659 CDD RRM3_I_PABPs 218 297 - -
Sto2g0581 659 Gene3D - 34 128 IPR012677 -
Sto2g0581 659 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 561 638 IPR002004 GO:0003723
Sto2g0581 659 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 40 634 IPR006515 GO:0003723
Sto2g0581 659 PANTHER RNA BINDING PROTEIN 29 643 - -
Sto2g0581 659 PANTHER POLYADENYLATE-BINDING PROTEIN 29 643 - -
Sto2g0581 659 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 219 296 IPR000504 GO:0003723
Sto2g0581 659 CDD RRM4_I_PABPs 321 399 - -
Sto2g0581 659 CDD RRM2_I_PABPs 126 202 IPR045305 -
Sto2g0581 659 SUPERFAMILY RNA-binding domain, RBD 219 402 IPR035979 GO:0003676
Sto2g0581 659 Gene3D - 205 304 IPR012677 -
Sto2g0581 659 Gene3D - 305 412 IPR012677 -
Sto2g0581 659 SMART rrm1_1 41 114 IPR000504 GO:0003723
Sto2g0581 659 SMART rrm1_1 129 201 IPR000504 GO:0003723
Sto2g0581 659 SMART rrm1_1 323 395 IPR000504 GO:0003723
Sto2g0581 659 SMART rrm1_1 220 292 IPR000504 GO:0003723
Sto2g0581 659 SMART poly_2 573 636 IPR002004 GO:0003723
Sto2g0581 659 Pfam Poly-adenylate binding protein, unique domain 569 633 IPR002004 GO:0003723
Sto2g0581 659 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 322 399 IPR000504 GO:0003723
Sto2g0581 659 SMART rrm2_1 323 395 IPR003954 GO:0003676
Sto2g0581 659 SMART rrm2_1 220 292 IPR003954 GO:0003676
Sto2g0581 659 SMART rrm2_1 41 114 IPR003954 GO:0003676
Sto2g0581 659 SMART rrm2_1 129 201 IPR003954 GO:0003676
Sto2g0581 659 CDD RRM1_I_PABPs 41 120 - -
Sto2g0581 659 SUPERFAMILY RNA-binding domain, RBD 41 209 IPR035979 GO:0003676
Sto2g0581 659 Gene3D - 557 640 - -
Sto2g0581 659 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 118 IPR000504 GO:0003723
Sto2g0581 659 Gene3D - 129 201 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g0581 Sto-Chr2 4895338 4924368 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto2g0581 36 658 Eukaryotic Initiation Factors Gene Family AT1G49760 73.228 0.0 914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto2g0581 2 4895338 4924368 Sto2g0581 2 4895338 4924368 ECH
Sto2g0581 2 4895338 4924368 Sto10g0280 10 2249251 2253343 ECH
Sto5g1168 5 7833138 7843670 Sto2g0581 2 4895338 4924368 ECH