Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g0564 ATGTCCATCATCGACTACGACGCCAAGGTGCACGTGCGTCGCGACGACGCTCACGTGAGGAAGATGTACGAAGCATGGTTGGTCAAGCATGGGAAAGCCTACAATGCCttgggagagaaagagaggcGATTTGAGATCTTTAAGGATAACTTGAGGTTTATTGATGAGCATAATAGGGTGGAGAACCGGTCCTTTCAATTGGGTCTGACCCGGTTCGCTGATCTCACCAATGAGGAGTACCGGTCCGTGTATTTGGGTGTTAGGTTTAACCGATCTGCCGCCGGTTTGAGGCTTTCCGCCTCGAGGAAGAGCGGCCGGTATGCCTACCGCGACGGCGATGAGCTGCCGGAGACCGTGGATTGGAGAGCCAAGGGTGCGGTGGGGCCGGTTAAAGATCAAGGCCAATGTGGGAGTTGCTGGGCATTCTCTACAATTGCTGCTGTGGAAGGAATAAACAAAATCGTAACGGGAGATTTGATATCTCTATCAGAACAAGAATTGGTAGATTGCGACAAGAGTTTTAACCAGGGATGCAATGGAGGCCTTATGGACAATGCTTTTGAGTTCATCATCCAAAATGGAGGCATTGATACCCAAGCCGATTACCCTTACCATGCTCGTGACTCCACATTGGTGAGCATCGACGGGTACGAAGACGTCCCGGAGAACGACGAGAATTCCTTAAAGAAAGCCGTCGCAAACCAACCCGTAAGCGTCGCAATCGAGGCCGGAGGCAGGGCGTTTCAGTTATATCAATCCGGCGTATTCAGCGGCCTATGCGGGACGGAGCTCGATCACGGCGTCGTGACCGTTGGATACGGGACGGAAAACGGCAAAGACTATTGGCTAGTGAGGAACTCGTGGGGCCCATCGTGGGGTGAGGAAGGTTACATCAAGCTGGAGCGTAATCTGGAGAATTCCAAGTCCGGGAAATGTGGGATCGCAATGGAGGCATCCTACCCTACAAAGAAAGGACCCAACCCTCCGAATCCAGGACCTTCCCCTCCATcaccttcccctcctcctccaaTGCCTGAGAATATGTGTGATGATTACTACACCTGCCCTTCCGGGACCACTTGTTGCTGCATTTACGAGTTCGAAAATTTCTGCTTCGGATGGGGATGCTGCCCGTTGGAATCCGCCACGTGTTGCGACGATCATTCGAGCTGCTGCCCTCATGATTACCCCGTCTGCGACACCGTGTCCGGAACCTGCCGTGTGAGCAAGGAGAGTCCATTGGGAGTGAAGGCATTGAGGAGAGGCCCAGCTTCCAGCATTGGAGCTCAACATAAACACGTTACCAAAATTAGTGTCGCATGA 1323 0.5094 MSIIDYDAKVHVRRDDAHVRKMYEAWLVKHGKAYNALGEKERRFEIFKDNLRFIDEHNRVENRSFQLGLTRFADLTNEEYRSVYLGVRFNRSAAGLRLSASRKSGRYAYRDGDELPETVDWRAKGAVGPVKDQGQCGSCWAFSTIAAVEGINKIVTGDLISLSEQELVDCDKSFNQGCNGGLMDNAFEFIIQNGGIDTQADYPYHARDSTLVSIDGYEDVPENDENSLKKAVANQPVSVAIEAGGRAFQLYQSGVFSGLCGTELDHGVVTVGYGTENGKDYWLVRNSWGPSWGEEGYIKLERNLENSKSGKCGIAMEASYPTKKGPNPPNPGPSPPSPSPPPPMPENMCDDYYTCPSGTTCCCIYEFENFCFGWGCCPLESATCCDDHSSCCPHDYPVCDTVSGTCRVSKESPLGVKALRRGPASSIGAQHKHVTKISVA 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g0564 440 MobiDBLite consensus disorder prediction 324 342 - -
Sto2g0564 440 Pfam Cathepsin propeptide inhibitor domain (I29) 23 80 IPR013201 -
Sto2g0564 440 Pfam Granulin 360 406 IPR000118 -
Sto2g0564 440 Gene3D Granulin 346 409 IPR037277 -
Sto2g0564 440 Pfam Papain family cysteine protease 115 322 IPR000668 GO:0006508|GO:0008234
Sto2g0564 440 PRINTS Papain cysteine protease (C1) family signature 133 148 IPR000668 GO:0006508|GO:0008234
Sto2g0564 440 PRINTS Papain cysteine protease (C1) family signature 266 276 IPR000668 GO:0006508|GO:0008234
Sto2g0564 440 PRINTS Papain cysteine protease (C1) family signature 281 287 IPR000668 GO:0006508|GO:0008234
Sto2g0564 440 SUPERFAMILY Granulin repeat 347 380 - -
Sto2g0564 440 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 264 274 IPR025660 -
Sto2g0564 440 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 281 300 IPR025661 -
Sto2g0564 440 SUPERFAMILY Cysteine proteinases 16 322 IPR038765 -
Sto2g0564 440 MobiDBLite consensus disorder prediction 322 342 - -
Sto2g0564 440 CDD Peptidase_C1A 116 321 IPR039417 -
Sto2g0564 440 Gene3D Cysteine proteinases 2 324 - -
Sto2g0564 440 SMART pept_c1 115 322 IPR000668 GO:0006508|GO:0008234
Sto2g0564 440 SMART GRAN_2 349 406 IPR000118 -
Sto2g0564 440 PANTHER CYSTEINE PROTEASE 11 352 - -
Sto2g0564 440 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 133 144 IPR000169 -
Sto2g0564 440 SMART Inhibitor_I29_2 23 80 IPR013201 -
Sto2g0564 440 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 11 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g0564 Sto-Chr2 4789362 4791689 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto2g0564 2 4789362 4791689 Sto2g0564 2 4789362 4791689 ECH
Sto5g1158 5 7742068 7745206 Sto2g0564 2 4789362 4791689 ECH
Sto9g3529 9 34373292 34376188 Sto2g0564 2 4789362 4791689 ECH