Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g0560 ATGGCTATCTACAATGAACACCACCACATCTCTCCTTCCTTCCTCGATGCTCTCTACTGTGACGAACCAAAATGGGAAGacccagaagaagaagaagaagtagaagtagaagtagagGTGGAAGGGAATAATGGGGATGCTTGGATCTTGCTGGAGCAAGATTTGTTCTGGGAAGATGAAGAGCTTAGCTCTCTCTTCTCCAAAGAGGAAGAAGCTTGTTCTGATGTTTTAAGTGTTGATCTCTCTCTTGCTCGTCGTGAAGCAGTGGAATGGATGCTGAGAGTGAATGCTCATTATGGGTTCTCTCTTCTCACTGCAACACTAGCCATTAACTATCTGGACAGATTCCTCTTCACCTTCCATTTCCAAAGGGAGAAGCCATGGATGATCCAGCTTGTTGCTGTCACTTGCCTCTCTCTGGCTGCCAAAGTTGAAGAGACTCAAGTCCCTCTTCTTCTAGACCTCCAAGTGGAAGACACCAAATACATGTTTGAGGCAAAAACTATACAGAGAATGGAGCTTCTGGTTCTTTCTACACTCAAATGGAAGATGCACCCAGTAACCCCACTTTCCTTTCTAGATCACATCATAAGAAGGCTTGGATTGAAAACCCATCTTCACTGGGAATTCCTCAGGCGCTCTCACCATCTTCTTCTATCCATCCTTCCagATTCAAGATTTGTGGGTTATCTTCCTTCGGTATTGGCCACAGCGACAATGCTGCATGTGGTAGACCAGATTGAGCAGAGTGAAGAAGGATTGGAATATAAAAAACAGCTTCTGGGTGAGAAAGTGGAAGAGTGTTATAATGCAATAGTGGAGGCGTCAAAGGGTAATAATGAGAATTACAAGGGTAGGAATAGGAAGAGGAAGTATGACCATGAGGAGGAAATTATGAGGAGTCCTGGAAGCCCAAGTGGCGTAATAGATGCAGTATTTGGGTGTGATGATGGTTCCAACGATTCCTGGGCAGTGgggtcatcatcatcatcattatgtTCATCCCCAGAGGCTTTGTTCAAGAAAACCAAACCACAagaccaacaacaacaacaaatgaCTCTGTCACCCTTTAATCCGGTGATTGTCGGAATCGTTGGCACTTCTCCTTAA 1113 0.4151 MAIYNEHHHISPSFLDALYCDEPKWEDPEEEEEVEVEVEVEGNNGDAWILLEQDLFWEDEELSSLFSKEEEACSDVLSVDLSLARREAVEWMLRVNAHYGFSLLTATLAINYLDRFLFTFHFQREKPWMIQLVAVTCLSLAAKVEETQVPLLLDLQVEDTKYMFEAKTIQRMELLVLSTLKWKMHPVTPLSFLDHIIRRLGLKTHLHWEFLRRSHHLLLSILPDSRFVGYLPSVLATATMLHVVDQIEQSEEGLEYKKQLLGEKVEECYNAIVEASKGNNENYKGRNRKRKYDHEEEIMRSPGSPSGVIDAVFGCDDGSNDSWAVGSSSSSLCSSPEALFKKTKPQDQQQQQMTLSPFNPVIVGIVGTSP 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g0560 370 Gene3D - 83 185 - -
Sto2g0560 370 PANTHER CYCLIN D3.1 PROTEIN 47 343 - -
Sto2g0560 370 SUPERFAMILY Cyclin-like 56 185 IPR036915 -
Sto2g0560 370 SUPERFAMILY Cyclin-like 188 292 IPR036915 -
Sto2g0560 370 Gene3D - 186 268 - -
Sto2g0560 370 SMART cyclin_7 90 178 IPR013763 -
Sto2g0560 370 SMART Cyclin_C_2 187 301 IPR004367 -
Sto2g0560 370 ProSitePatterns Cyclins signature. 85 116 IPR006671 -
Sto2g0560 370 Pfam Cyclin, C-terminal domain 187 296 IPR004367 -
Sto2g0560 370 CDD CYCLIN 85 177 IPR013763 -
Sto2g0560 370 Pfam Cyclin, N-terminal domain 83 184 IPR006671 -
Sto2g0560 370 PANTHER CYCLINS 47 343 IPR039361 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g0560 Sto-Chr2 4768614 4769994 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto2g0560 1 274 Core Cell Cycle Gene Families AT4G34160 60.279 7.94e-110 324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto2g0560 2 4768614 4769994 Sto2g0560 2 4768614 4769994 ECH
Sto2g0560 2 4768614 4769994 Sto10g0306 10 2420563 2422455 ECH
Sto5g1154 5 7713826 7715209 Sto2g0560 2 4768614 4769994 ECH