Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto2g0508 ATGGCTTTAGAGGCTCTCAATTCTCCTACCACCTTgccttataataataataaacgcATCCATCATGAGGAAGAAGATATTGATGATGAGATTGATCTTCACTGGTCCAAAGGCAAGCGCTCCAAACGACCTCGTTTCGACACCGCCAATTCCGAAGAAGAGTACCTCGCTCTCTGCCTCATCATGCTCGCTCATAGTGACCAAAACACTACCAGCACCATACGACGTCGTTCACCACCAGATTCGTCCTCCTCGTTATCTCCGCCTGTTCCCGCCAATAATCCGAATCCTGTGAATAATGATGTGAATGTGAAGCTCTCTCATCGGTGTACGGTCTGCAATAAAGCCTTCTCCTCTTATCAAGCACTCGGCGGCCACAAGGCCAGCCACCGCAAGTCCTCCTCGGAATCCACCGCCGCCGATAACGCATCCACCTCCTCCGCTGCCGGAGCTTCCGGATCCGGCAAGATGCATCAGTGTTCCATCTGTCATAAGTCCTTCCCTACCGGTCAGGCGCTGGGCGGGCACAAGAGATGTCACTACGACGGCGGCAGCAGCAGCAACgggaacaacaacaacaacaacagcaGCAGCAACAGCGCCGGCGCCGGATTGACCTCGTCGGACGGAGGCGGCGCGTCGACTCTGAGTCACCGCGGGTTCGATTTGAACCTGCCGGCTCCGTTGACGGAATTCTCGGTCGGCGGCGATGGGAAGAGTGTGGAACAGGAGGTGGAAAGTCCGTTACCGGCtatcaatttatttaaaaaagaattacGAATTGTTATAACTTTTGACCCAAATGCTAATTAA 813 0.4994 MALEALNSPTTLPYNNNKRIHHEEEDIDDEIDLHWSKGKRSKRPRFDTANSEEEYLALCLIMLAHSDQNTTSTIRRRSPPDSSSSLSPPVPANNPNPVNNDVNVKLSHRCTVCNKAFSSYQALGGHKASHRKSSSESTAADNASTSSAAGASGSGKMHQCSICHKSFPTGQALGGHKRCHYDGGSSSNGNNNNNNSSSNSAGAGLTSSDGGGASTLSHRGFDLNLPAPLTEFSVGGDGKSVEQEVESPLPAINLFKKELRIVITFDPNAN 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto2g0508 270 MobiDBLite consensus disorder prediction 70 102 - -
Sto2g0508 270 ProSiteProfiles Zinc finger C2H2 type domain profile. 108 135 IPR013087 -
Sto2g0508 270 SMART c2h2final6 158 180 IPR013087 -
Sto2g0508 270 SMART c2h2final6 108 130 IPR013087 -
Sto2g0508 270 ProSitePatterns Zinc finger C2H2 type domain signature. 110 130 IPR013087 -
Sto2g0508 270 SUPERFAMILY beta-beta-alpha zinc fingers 108 180 IPR036236 -
Sto2g0508 270 MobiDBLite consensus disorder prediction 1 48 - -
Sto2g0508 270 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 1 251 IPR044653 GO:0003700
Sto2g0508 270 Pfam C2H2-type zinc finger 108 132 - -
Sto2g0508 270 Pfam C2H2-type zinc finger 158 182 - -
Sto2g0508 270 MobiDBLite consensus disorder prediction 128 155 - -
Sto2g0508 270 MobiDBLite consensus disorder prediction 135 154 - -
Sto2g0508 270 ProSiteProfiles Zinc finger C2H2 type domain profile. 158 180 IPR013087 -
Sto2g0508 270 ProSitePatterns Zinc finger C2H2 type domain signature. 160 180 IPR013087 -
Sto2g0508 270 PANTHER ZINC FINGER PROTEIN ZAT10 1 251 - -
Sto2g0508 270 MobiDBLite consensus disorder prediction 17 48 - -
Sto2g0508 270 MobiDBLite consensus disorder prediction 185 219 - -
Sto2g0508 270 MobiDBLite consensus disorder prediction 185 214 - -
Sto2g0508 270 Gene3D Classic Zinc Finger 106 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto2g0508 Sto-Chr2 4358281 4361455 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto2g0508 1 251 C2H2 Transcription Factor Family AT1G27730 46.415 9.64e-54 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sto2g0508 zf-C2H2_6 1.7e-11 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto2g0508 2 4358281 4361455 Sto2g0508 2 4358281 4361455 ECH
Sto5g1122 5 7535603 7536397 Sto2g0508 2 4358281 4361455 ECH