Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g2415 ATGGTTTTCACTTCCATCCCTGCCTATCTTGATCCAGCCAACTGGCACCACCACCAGCATCCAAATCATCACACCGGCGGTAGTGTCGTCACCGGTGGCGGTACGAGCTCTGAGCAACAGCAACAGCAGCAGCTTCTTTCTCCACCGCCGCCTCCTCCTCATGGAGCGGGCGGCACGGGGTCGATCAGGCCGGGGTCGATGGCGGACCGGGCAAGGATGGCGAACATACCGATGCCGGAGGCCGCGCTGAAATGCCCTCGCTGTGACTCCACAAACACCAAATTTTGCTACTTCAACAACTACAGCCTGTCTCAGCCTCGCCACTTCTGCAAGGGTTGCCGGAGGTACTGGACCCGAGGCGGCGCGTTGAGGAATGTGCCGGTGGGAGGCGGATGCCGGAGGAACAAGAGGACCAAGGGAAGCTCCTCCAAGTCCTCCCCGCCGGTCAGCTCGGACCGCCAGAGCGCCAGCTCCACCAACTCCGTCTCCTCCAACAGCGGCTGCTCCGACATAGTAGGCCTTCCATCCCCTCACGCGCCGCCGCTGAGGTTCATGGCCCCATTACTCTCCACCACCACTCATGACTTTGCAGCTGCAGGTGGTGAAATAATGGGGTTGAACAACTATGGCCTCAATTACAACACAATttcagcatcatcatcatcatcaccactcATGGGAGGAATTGGGGACTTGAATTTCCATATAGGAAGTGCTCTAGGCGGCGGAGGAGGAGGAAGTGGCGGCGCCGGATCTATCTTATTGGACCAATGGAGGGTCCCACTCCCACAAACACAGCAATTTCCTTTCTTGGGTGGGTTGGAAGCTTCACAACTTGGATTGTACCCATTCGAAGGCGTTGCCGGGGCGGCGGCCGAGGGACCCGGCGCCGGAGGCTACGGCATGGGCGGGCGGGCGAAGGTATCGGCTTCGGCGGTGACAACTCAGATGGCATCAGTGAAAATGGAAGACCAGCGGGAGCTGAATTTGTCAAGACAGTTCTTGggaatgaataataataataatattgcagCAAGTGATGAAGTGCAGTATTGGAGTGGTACTACTACTAATACTCCTGCTTGGACAGATCTTTCTGGGTTTAGCTCTTCCTCCAATACTAGCAACCAACTATAA 1137 0.5453 MVFTSIPAYLDPANWHHHQHPNHHTGGSVVTGGGTSSEQQQQQQLLSPPPPPPHGAGGTGSIRPGSMADRARMANIPMPEAALKCPRCDSTNTKFCYFNNYSLSQPRHFCKGCRRYWTRGGALRNVPVGGGCRRNKRTKGSSSKSSPPVSSDRQSASSTNSVSSNSGCSDIVGLPSPHAPPLRFMAPLLSTTTHDFAAAGGEIMGLNNYGLNYNTISASSSSSPLMGGIGDLNFHIGSALGGGGGGSGGAGSILLDQWRVPLPQTQQFPFLGGLEASQLGLYPFEGVAGAAAEGPGAGGYGMGGRAKVSASAVTTQMASVKMEDQRELNLSRQFLGMNNNNNIAASDEVQYWSGTTTNTPAWTDLSGFSSSSNTSNQL 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g2415 378 MobiDBLite consensus disorder prediction 141 170 - -
Sto1g2415 378 Pfam Dof domain, zinc finger 82 137 IPR003851 GO:0003677|GO:0006355
Sto1g2415 378 ProSitePatterns Zinc finger Dof-type signature. 85 121 IPR003851 GO:0003677|GO:0006355
Sto1g2415 378 PANTHER DOF ZINC FINGER PROTEIN DOF3.6 6 374 - -
Sto1g2415 378 ProSiteProfiles Zinc finger Dof-type profile. 83 137 IPR003851 GO:0003677|GO:0006355
Sto1g2415 378 MobiDBLite consensus disorder prediction 127 170 - -
Sto1g2415 378 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 6 374 IPR045174 GO:0003700|GO:0006355
Sto1g2415 378 MobiDBLite consensus disorder prediction 24 44 - -
Sto1g2415 378 MobiDBLite consensus disorder prediction 14 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g2415 Sto-Chr1 31860558 31861927 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g2415 1 353 C2C2-Dof Transcription Factor Family AT5G02460 38.200 3.25e-55 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Sto1g2415 zf-Dof 2.6e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g2415 - - rcu:8279572 328.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto1g2415 1 31860558 31861927 Sto1g2415 1 31860558 31861927 ECH
Sto6g0654 6 6917005 6918474 Sto1g2415 1 31860558 31861927 PCT