Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2268 ATGGTCGCCGAGACGCTCCCTTATGAAAACGGCGTCGTTGCCAACGGCGATCTGAGCGCGACATCTAATTCCACCGCCGCCAAGAAGTCGCGGGAGAGCGAGCGCCGTCGCCGCCGACGGAAGCAGAAGAAGAACAAGGCATCTCAGGAAACGGAGTCTAATAATGCTGCTGAAGACGGTGACGCAGCAGATACAGCAGATGAGGATGCCAAGGAGAATACGAATCCACAGCAGGTTGTTGAAAAAGTGGAGATTGAGTATGTCCCGGAGAAGGCAGAGTTAGATGAAGGCTTAGATGAAGAATTTAGAAAAATCTTTGAGAAATTTAGTTTCAGTGATGTTACCGGTTCTGAGGATAATGATAAGAAAGATGAGTCAACAGAAAATGCTGCTACTACTAAGAAGGCTGACTCAGATTCTGAAGAGGAAGAAAATGATAACGAgcaaaaagagaaaggaatctcaaacaagaagaaaaagCTTCAACGACGGATGAAGATTGCTGAACTAAAGCAGATTTGCTCAAGGCCTGATGTTGTTGAGgtgtGGGATGCCACTGCAGCAGACCCAAAGTTGCTGGTGTTTTTAAAATCTTATCGTAATACTGTACCTGTACCAAGGCATTGGTGTCAGAAGAGGAAATTTTTGCAGGGTAAGCGAGGTATTGAGAAGCAACCCTTCCAGCTTCCTGATTTTATTGCTGCCACAGGAATTGAGAAAATCAGACAGGCTTACATTGAGAAAGAGGACAGTAAAAAGTTGAAGCAAAAGCAAAGGGAGCGTATGCAACCGAAAATGGGAAAAATGGATATTGACTATCAGGTTCTTCATGATGCATTCTTCAAATACCAGACAAAGCCAAAGCTGACGAGTCTAGGGGACCTCTACCACGAGGGAAAAGAATTTGAGGTCAAGTTGAGGGAGATGAAGCCTGGTATTTTGTCGCACGAGCTGAAGGAAGCTCTTGGTATGCCTGAGGGTGCTCCTCCTCCGTGGCTTATTAACATGCAGAGATATGGCCCTCCACCATCATACCCTCATCTTAAGATACCTGGGTTGAATGCTCCTATTCCTCCTGGAGCTAGCTTTGGTTATCATCCCGGTGGATGGGGCAAGCCTCCAGTTGATGAATATGGGCGTCCACTATATGGAGATGTTTTTGGCGTTCATCAACAAGAACAGCCTAACTATGAGGAGGAACCCATTGACAAGACCAAACATTGGGGTGActtggaggaggaagaagaggaagaagaagaagaggaggaggaggaagaagaagaggaaatggAGGAGGAAGAACTTGAAGATGGTATTCAATCTGTTGATAGCCTTTCAAGCACTCCCACTGGAGTGGAGACACCTGATGTTATTGACCTTCGTAAGCAGCAGAGGAAGGAACCTGACAGGCCGCTTTATCAAGTActtgaagagaaagaagaaaaaattgcTCCAGGAACTTTACTGGGAACCACGCATACTTATGTGGTTGGAACTGGTGCCCAGGACAAGTCAGCAGCTAAAaggGTTGATTTGCTTAGAGGTCAGAAGTCAGATAAGGTGGATGTTACTCTGCAGCCGGAAGAGTTGGAAGCTATGGAAAATGTTTTGCCTGCCAAGTATGAGGAAGCAAGGGAGGAAGAGAAGTTGCGGAGTCAACGTGAGGATTTTAGTGACATGGTTGCAGAAcatatatatgtatatatgggtTTGAGTTCTAAGCAGGTTTCTAGCCGTGGGGTTGATTGGAACCAGACGTTACTGCAAGATCAAAACTTGGAACTTCCAAAACCTCCATTGATGAGAAAATTACAACAACAATCTCAGCAATCATCGTCATCATCGGAGGCTTTGAAGTGTCCGAGGTGTGATTCTACCAACACCAAGTTTTGTTACTACAACAACTACAACAAGTCTCAGCCTCGCCATTTCTGCAGAACCTGCAAGAGGCACTGGACTAAAGGTGGCACCTTGCGCAATGTCCCCGTCGGCGGTGGCCGGAAGAACAAAAGGGTCAAGAAATCAACCACCCCCacctccgccgccgccgccgtagCCTCCACCTCGGCCGCCACCGCCGGTGGTGGTGGGTTGAATAATACCCACATGAGAATTCCAAATCAAAATCCCCTGCATCAGAGGCAgagtactactactactactactactctgcctcttccttcttcttcttcttcctctgcctCTCTCTATCAAGCCCTGCTTCGTCCTCCTCCGCCACACCCACAGCCATCCTTGCTTCCACAGCAGAATCTGATGGGTACTAATAATAACAATGGTGGTAACGGAAGCAGCTTCCTGAGTTCAACGACTCTGCCTCTTGTTCATCAAAATCAAAACTTTCTCTTCCCCTTCTCAAGCTCAACCTCTTTTGAGACCAACCCGTGTTCTGTTTCGACCTCTTTGAGATCCTCCAATAATAATGTTTATAGCTATGGGGAAGACTTGAAAACAATGGAGGAGCCAACCCTAACCACAACCACACAGGCACATCCATGGGAGAATATGCCTTCCACAGGCGTAGGCAATATGGGAGGAATGTCAAGCTATTGGAGTTGGGAAGATATAGATTCATTGGTCTCAACTGATCTCAATGTTCCTTGGGATGACTCTGATTTAAAACCTTGA 2646 0.4255 MVAETLPYENGVVANGDLSATSNSTAAKKSRESERRRRRRKQKKNKASQETESNNAAEDGDAADTADEDAKENTNPQQVVEKVEIEYVPEKAELDEGLDEEFRKIFEKFSFSDVTGSEDNDKKDESTENAATTKKADSDSEEEENDNEQKEKGISNKKKKLQRRMKIAELKQICSRPDVVEVWDATAADPKLLVFLKSYRNTVPVPRHWCQKRKFLQGKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKLTSLGDLYHEGKEFEVKLREMKPGILSHELKEALGMPEGAPPPWLINMQRYGPPPSYPHLKIPGLNAPIPPGASFGYHPGGWGKPPVDEYGRPLYGDVFGVHQQEQPNYEEEPIDKTKHWGDLEEEEEEEEEEEEEEEEEEMEEEELEDGIQSVDSLSSTPTGVETPDVIDLRKQQRKEPDRPLYQVLEEKEEKIAPGTLLGTTHTYVVGTGAQDKSAAKRVDLLRGQKSDKVDVTLQPEELEAMENVLPAKYEEAREEEKLRSQREDFSDMVAEHIYVYMGLSSKQVSSRGVDWNQTLLQDQNLELPKPPLMRKLQQQSQQSSSSSEALKCPRCDSTNTKFCYYNNYNKSQPRHFCRTCKRHWTKGGTLRNVPVGGGRKNKRVKKSTTPTSAAAAVASTSAATAGGGGLNNTHMRIPNQNPLHQRQSTTTTTTTLPLPSSSSSSASLYQALLRPPPPHPQPSLLPQQNLMGTNNNNGGNGSSFLSSTTLPLVHQNQNFLFPFSSSTSFETNPCSVSTSLRSSNNNVYSYGEDLKTMEEPTLTTTTQAHPWENMPSTGVGNMGGMSSYWSWEDIDSLVSTDLNVPWDDSDLKP 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2268 881 MobiDBLite consensus disorder prediction 396 411 - -
Sto13g2268 881 PANTHER SPLICING FACTOR 3B SUBUNIT 2-LIKE 13 566 - -
Sto13g2268 881 MobiDBLite consensus disorder prediction 753 772 - -
Sto13g2268 881 PANTHER SPLICING FACTOR 3B 13 566 - -
Sto13g2268 881 MobiDBLite consensus disorder prediction 675 738 - -
Sto13g2268 881 Coils Coil 140 171 - -
Sto13g2268 881 MobiDBLite consensus disorder prediction 412 439 - -
Sto13g2268 881 SMART testneu 306 359 IPR006568 -
Sto13g2268 881 Pfam Dof domain, zinc finger 617 670 IPR003851 GO:0003677|GO:0006355
Sto13g2268 881 MobiDBLite consensus disorder prediction 113 140 - -
Sto13g2268 881 ProSitePatterns Zinc finger Dof-type signature. 620 656 IPR003851 GO:0003677|GO:0006355
Sto13g2268 881 MobiDBLite consensus disorder prediction 394 468 - -
Sto13g2268 881 MobiDBLite consensus disorder prediction 659 772 - -
Sto13g2268 881 Pfam Domain of unknown function (DUF382) 176 301 IPR007180 GO:0005634
Sto13g2268 881 MobiDBLite consensus disorder prediction 113 158 - -
Sto13g2268 881 MobiDBLite consensus disorder prediction 1 96 - -
Sto13g2268 881 Coils Coil 408 438 - -
Sto13g2268 881 ProSiteProfiles Zinc finger Dof-type profile. 618 672 IPR003851 GO:0003677|GO:0006355
Sto13g2268 881 Pfam PSP 310 355 IPR006568 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2268 Sto-Chr13 29395329 29409083 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2268 602 689 C2C2-Dof Transcription Factor Family AT5G60850 57.303 1.85e-29 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Sto13g2268 DUF382 5e-58 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2268 K12829 - gmx:100797656 944.11