Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g2204 ATGCTCTGCAGCCACTGTATAAAGATGGACAACAAGAAGACTACAAAGCAAGGGAATATAATGGGTGAGGGAAACAGATCGAAGAGTGATTATGGGGTTGTAGACGAAGTGAGAGTGAATGAACAATTCTCTAACCTTTTAAAAATGGTAGATGATCAGAAGGTGAGGACAATGGGTTCTGGTGGTCATAGGACAGCAATGGAAAAACCTGCGTCTCAGAATCAAGACCAACAATTATCTCTCAAGTGCCCTCGCTGTGATTCCTCCAACACCAAGTTCTGCTACTACAACAACTACAGCTTGTCTCAGCCTAGACACTTCTGCAAATCCTGCAAGCGTTATTGGACCAGAGGAGGCACTCTCAGAAACGTTCCTGTCGGTGGTGGATGCAGGAAAAACAAGCGCCTCAAGCGTCCAACTCCAACTCcaaccccttcttcttcttctgctaaTTCTGATCTTCCCACTACTGCTAATTCAACCCTTCCTTCTCAACCCCACATCCTTGATAATCCTCTGTTTTATGGGTTACCCACTACTACCACTACTAGTACTAACTCTAGTTCTGATATGAGTATGAGTATGAGTATGAGTCTTCCCTTCCCGAGGTTCAATTCTGGGTTTGATCATCATCACCACCACCTGAATGCTCTTGGATTGGGGTTTTCATCTGGGTTTGGTGGTTCAAATAACGATGCGCTTGTGTCAAGCTATAATTCCATCTTTGgtaactcttcttcttctatggCCTCCTTGCTAATAAGCCCTACTACCATGAATGGGGGTTTGAAGGAGGATGATTTGCAAGCTGGGTTAGAAGGAGTGAAAGGGGAGGAAGAAAGACAAAACGTGGAGATGATGGAACATGGGGGAGGAGGCGGATTATTGTCGGATTATTCACCTTATTATCATTGGAACGCACCAACAGCTATGGGTGCTGCTTGGACTGACCAATCTAATAATGTTGGTCTCATCTAG 978 0.4274 MLCSHCIKMDNKKTTKQGNIMGEGNRSKSDYGVVDEVRVNEQFSNLLKMVDDQKVRTMGSGGHRTAMEKPASQNQDQQLSLKCPRCDSSNTKFCYYNNYSLSQPRHFCKSCKRYWTRGGTLRNVPVGGGCRKNKRLKRPTPTPTPSSSSANSDLPTTANSTLPSQPHILDNPLFYGLPTTTTTSTNSSSDMSMSMSMSLPFPRFNSGFDHHHHHLNALGLGFSSGFGGSNNDALVSSYNSIFGNSSSSMASLLISPTTMNGGLKEDDLQAGLEGVKGEEERQNVEMMEHGGGGGLLSDYSPYYHWNAPTAMGAAWTDQSNNVGLI 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g2204 325 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 65 281 IPR045174 GO:0003700|GO:0006355
Sto13g2204 325 ProSiteProfiles Zinc finger Dof-type profile. 81 135 IPR003851 GO:0003677|GO:0006355
Sto13g2204 325 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 65 281 - -
Sto13g2204 325 MobiDBLite consensus disorder prediction 125 166 - -
Sto13g2204 325 Pfam Dof domain, zinc finger 81 135 IPR003851 GO:0003677|GO:0006355
Sto13g2204 325 MobiDBLite consensus disorder prediction 139 166 - -
Sto13g2204 325 ProSitePatterns Zinc finger Dof-type signature. 83 119 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g2204 Sto-Chr13 28895990 28900461 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g2204 81 187 C2C2-Dof Transcription Factor Family AT1G28310 59.649 2.02e-36 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Sto13g2204 zf-Dof 1.8e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g2204 - - gmx:778105 199.134
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g2204 13 28895990 28900461 Sto13g2204 13 28895990 28900461 ECH
Sto13g2204 13 28895990 28900461 Sto13g2204 13 28895990 28900461 PCT