Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g1882 ATGGGAAGAGGGAGGATTCAGCTGAAGCGTATCGAGAACAACGCAAGCCGACAAGTGACGTTCTCGAAGCGGAGAACCGGTTTGCTTAAGAAAGCCAACGAAATCTCTGTACTCTGTGACGCCCAAGTCGCCTTGATCGTCTTCAATTCCAAAGGCAAGCTCACTCACTACTCCTCCCAATCCGCCAGCATGGAAAGCATATTGGATAGATATGAAAGACAAGCACGCTCAGAACAACTTGCTGGAACTAACAATGATTCACAGggAGACTGGTCCTTGGAATTATTCAAGCTTACTTCTAGAGTTGAAGTCTTGCAAAAGAACATAAGTGGAGGTTTAGAAGGAAGAGGACGTGAGGTGGAAGAAGCTGGGCCTAGTAATAACGTTGTCATGCCACCATGGATGCAGTTTCACATGGCTAgATCCATTCAGCCTCACCTCATCCCACGCCGCCTCGTCGCCGACCGTTCATCTTCTTcgacaaagaagaagaagcaaaatagTGATTTACCTCCATTTTCCGTGTCCCTCTCCCACTACGTTTGTCTTCTCCGgcgaagaaggagaagaacagTGATGGACTCGACCTCCATTTTTCATTTCTCCCTCCCACTCCGCTCGTCTTCTCCGACGAAGAAGATTAAGAATTGTGATAGACTCGAACCTCCATTTTCTAGTTTCCCACTCCTACTCCATTTATCTTCTCTTGCGAAAAACAAGGCGGATCTGTCACTTTCTGTTCGTCTTTCcggcgaagaagaagaacaatga 771 0.4293 MGRGRIQLKRIENNASRQVTFSKRRTGLLKKANEISVLCDAQVALIVFNSKGKLTHYSSQSASMESILDRYERQARSEQLAGTNNDSQGDWSLELFKLTSRVEVLQKNISGGLEGRGREVEEAGPSNNVVMPPWMQFHMARSIQPHLIPRRLVADRSSSSTKKKKQNSDLPPFSVSLSHYVCLLRRRRRRTVMDSTSIFHFSLPLRSSSPTKKIKNCDRLEPPFSSFPLLLHLSSLAKNKADLSLSVRLSGEEEEQ 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g1882 256 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Sto13g1882 256 PANTHER BNAA09G02740D PROTEIN 1 110 - -
Sto13g1882 256 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Sto13g1882 256 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Sto13g1882 256 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 110 - -
Sto13g1882 256 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977|GO:0045944
Sto13g1882 256 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Sto13g1882 256 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Sto13g1882 256 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Sto13g1882 256 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Sto13g1882 256 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Sto13g1882 256 Gene3D - 13 87 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g1882 Sto-Chr13 26282438 26289605 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sto13g1882 SRF-TF 5.9e-24 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g1882 13 26282438 26289605 Sto12g0992 12 6183324 6187809 ECH
Sto13g1882 13 26282438 26289605 Sto13g1882 13 26282438 26289605 ECH
Sto11g0844 11 9154020 9166696 Sto13g1882 13 26282438 26289605 ECH