Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g1831 ATGGTGAAGATTTGCTGCATTGGTGCTGGATATGTCGGTGGTCCTACCATGGCTGTCATTGCACTGAAGTGCCCATCCATTGAAGTGGCTGTTGTTGATATCTCGGTATCCCGTATTGCAGCCTGGAATAGCGACCAGCTTCCTATCTATGAGCCAGGCCTTGATGATGTTGTAAAGCAATGCCGTGGCAGGAACCTCTTCTTCAGCACTGATGTAGAAAAACATGTCTGTGAAGCTGACATAGTGTTCGTCTCTGTTAACACCCCAACTAAAACCAGGGGTCTTGGAGCTGGGAAAGCAGCAGATTTGACATACTGGGAGAGTGCAGCTCGCATGATTGCTGATGTCTCCAAATCTGACAAAATTGTGGTTGAGAAATCTACTGTCCCTGTCAAAACTGCTGAGGCCATAGAAAAAATTCTTACCCACAATGGCAAGGGGATTAAATTCCAGATCCTATCTAACCCAGAATTCCTTGCTGAGGGAACTGCAATTGAAGATCTCTTCAAACCAGACCGTGTCCTAATTGGAGGCCGGGAGACCCCCGAAGGACAGAAAGCCATTCAAGCATTGAAGGATGTTTATGCTCATTGGGTTCCAGAGGACCGAATTCTAACCACAAATCTCTGGTCCGCCGAGCTGTCTAAGCTCGCTGCCAATGCCTTCTTGGCCCAAAGAATTTCATCTGTCAATGCCATGTCAGCACTCTGTGAGGCCACCGGGGCTAACGTCAAACAGGTGTCCTTTGCTGTTGGTACAGACTCAAGGATTGGCCCCAAGTTCCTCAATGCCAGTGTTGGCTTTGGTGGATCTTGCTTTCAGAAAGACATCTTGAACCTTGTCTACATCTGCGAGTGCAATGGCCTTCCAGAGGTGGCTGAATACTGGAAACAAGTCATCAAGATCAATGACTACCAGAAGGGCCGATTCGTGAACCGTGTTGTTGCCTCCATGTTCAACACAGTCGCCAACAAGAAGATCGCCATTCTGGGATTCGCCTTCAAGAAAGATACCGGTGACACTAGGGAGACCCCCGCCATTGATGTGATGAACAAATTTGATTGGGACCATCCTATCCACCTACAGCCCATGAGTCCCTCCACTGTGAAGCAAGTCAGTGTGGTTTGGGATGCCTATGCAGCAACCAAGGATGCACACGGCCTTTGCATTCTGACTGAGTGGGATGAGTTCAGGAACCTTGATTATCAGAAAATATTTGACAACATGCAAAAACCAGCATTTGTCTTTGATGGCAGAAACATTGTGGACGTCGACAAATTGCGCGAAATTGGCTTCATCGTTTACTCGATCGGTAAGCCACTTGACCCATGGCTCAAAGACATGCCAGCTGTGGCTTGA 1359 0.4798 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRIAAWNSDQLPIYEPGLDDVVKQCRGRNLFFSTDVEKHVCEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNGKGIKFQILSNPEFLAEGTAIEDLFKPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVKQVSFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKGRFVNRVVASMFNTVANKKIAILGFAFKKDTGDTRETPAIDVMNKFDWDHPIHLQPMSPSTVKQVSVVWDAYAATKDAHGLCILTEWDEFRNLDYQKIFDNMQKPAFVFDGRNIVDVDKLREIGFIVYSIGKPLDPWLKDMPAVA 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g1831 452 Gene3D - 1 208 - -
Sto13g1831 452 PIRSF UDPglc_DH_euk 1 452 IPR028356 GO:0003979
Sto13g1831 452 Pfam UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3 186 IPR001732 GO:0016616|GO:0051287
Sto13g1831 452 Gene3D - 241 449 - -
Sto13g1831 452 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 202 IPR036291 -
Sto13g1831 452 SMART UDPG_MGDP_dh_C_a_2_a 328 424 IPR014027 GO:0016616|GO:0051287
Sto13g1831 452 PIRSF UDPglc_GDPman_dh 2 439 IPR017476 GO:0016616
Sto13g1831 452 Pfam UDP-glucose/GDP-mannose dehydrogenase family, central domain 210 304 IPR014026 GO:0016616|GO:0051287
Sto13g1831 452 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 210 309 IPR008927 -
Sto13g1831 452 PANTHER UDP-GLUCOSE 6-DEHYDROGENASE 350 452 - -
Sto13g1831 452 PANTHER UDP-GLUCOSE 6-DEHYDROGENASE 1 349 - -
Sto13g1831 452 SUPERFAMILY UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 314 435 IPR036220 -
Sto13g1831 452 Gene3D - 209 240 - -
Sto13g1831 452 Pfam UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 328 423 IPR014027 GO:0016616|GO:0051287
Sto13g1831 452 PANTHER UDP-GLUCOSE DEHYDROGENASE/UDP-MANNAC DEHYDROGENASE 350 452 IPR028356 GO:0003979
Sto13g1831 452 PANTHER UDP-GLUCOSE DEHYDROGENASE/UDP-MANNAC DEHYDROGENASE 1 349 IPR028356 GO:0003979
Sto13g1831 452 TIGRFAM NDP-sugDHase: nucleotide sugar dehydrogenase 3 420 IPR017476 GO:0016616
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g1831 Sto-Chr13 25687444 25688886 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g1831 13 25687444 25688886 Sto12g0949 12 5892221 5893654 ECH
Sto13g1831 13 25687444 25688886 Sto13g1831 13 25687444 25688886 ECH
Sto11g0877 11 9428561 9430003 Sto13g1831 13 25687444 25688886 ECH
Sto6g2959 6 36761494 36762939 Sto13g1831 13 25687444 25688886 ECH