Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g1769 ATGTCGGAAGCATCAGACCCGGCGATCAAGCTCTTCGGGAAGACGATCCCGCTGCCGGAGATCGCGCCCCGATCTGCCGGAGCTCCGGCTGAGGATGATGTTGTTCTTGCTGTTGTTGATGATGAGAGTATTGATCGGAATCGCGCTGCTTCTCCCGCAGACTCATCGTGCGAGTCCGATTCAAACAGGGATGGagatggaggaggaggagagcaAGAGACTGCCAAGGATTCTCTGGGAAAAAAACCAGTTGACAataagaaggaagaaggagCCCCTACTCAAGCTGCAGAAGAGTTCACTAATCCAGATGCAGACTCAATGACAGGTGAAGAATCAATTACACCCTCCATTGAGAAGGAGGCTACTACCTTGAAGGCTTCAAAATCTGAAGAAGATCAGAGTGAGACAAGTAATTCCCAAGAGAAAACCCTGAAAAAGCCAGATAAAATACTGCCTTGCCCCCGCTGTAGTAGCATGGACACCAAATTTTGCTACTACAACAATTACAATGTTAACCAACCCCGCCACTTCTGCAAGAACTGCCAGAGATACTGGACTTCTGGTGGAACCATGAGGAATGTCCCTGTTGGTGCTGGTCGTCGAAAGAACAAGAACTCTGCTTCTCACTATCGCCAGATAGCTGTCTCTGAAGCTCTCCATAATGCTCGAACAGAGTTGCCAAATGGAGTCCATCATCCTGCCTTGAAGTCTAATGGCAAAGTCCTTACATTTGGGTCTGATACACCCTTGTGTGAATCAATGGCATCTGTTTTGAACCTTGCCGACAAAACAATGCATAACCAAACAAGAAATGGATTTCAGAGACCTGAAGAGCTAAGAATTCCGGTTACTTATGCAAGTGGAGAGAAAGGGGATGATCATTCCAATAAATCTTCCGTGATGTCAACAAAACCAATGGAAGATACAAGCATAAACAGGCCCCAGGAACAGGTTATGCAGAATTGTCAGAGCTTCCCACCTCAAGTTCCCTACTTTCCTGGGGCACCTTGGCCTTTTCCATGGAATCCAGCACAGTGGAGATCTCCAGTACCACCACCACATGCGTTTTGCACTCCAGGATTTACCATGCCATTCTATCCAGCAGCAGCATATTGGGGTTGTGCATTATCGGGTGCTTGGAACGTCCCATGGCTCGCGCAACCATCTTCACCAAGCAGTGGAGGCCCTAATTCTGGCCCTAACTCCCCAACCTTGGGTAAACATTCAAGGGAAGAAAACATGCTCAAGATAAATGACCCTGGGGGAGAAGAcgaacatagaaaagagaataataaagaaaagtgtCTTTGGGTACCGAAAACGCTGAGGATTGATGATCCAGGAGAAGCAGCTAAAAGCTCTATATGGACAACACTGGGGATTAAGAATGATAAGGCTGACTCAATTCAAGGGGGAGGACTCTTTAAGGCATTCCCACCAAAGGGTGACGGAAAAGATCATTCAGTACAATCCTCAACAGTCTTGCAGGCCAATCCAGCAGCACTGTCTAGGTCTGGTTGTGAAATGTAA 1533 0.454 MSEASDPAIKLFGKTIPLPEIAPRSAGAPAEDDVVLAVVDDESIDRNRAASPADSSCESDSNRDGDGGGGEQETAKDSLGKKPVDNKKEEGAPTQAAEEFTNPDADSMTGEESITPSIEKEATTLKASKSEEDQSETSNSQEKTLKKPDKILPCPRCSSMDTKFCYYNNYNVNQPRHFCKNCQRYWTSGGTMRNVPVGAGRRKNKNSASHYRQIAVSEALHNARTELPNGVHHPALKSNGKVLTFGSDTPLCESMASVLNLADKTMHNQTRNGFQRPEELRIPVTYASGEKGDDHSNKSSVMSTKPMEDTSINRPQEQVMQNCQSFPPQVPYFPGAPWPFPWNPAQWRSPVPPPHAFCTPGFTMPFYPAAAYWGCALSGAWNVPWLAQPSSPSSGGPNSGPNSPTLGKHSREENMLKINDPGGEDEHRKENNKEKCLWVPKTLRIDDPGEAAKSSIWTTLGIKNDKADSIQGGGLFKAFPPKGDGKDHSVQSSTVLQANPAALSRSGCEM 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g1769 510 MobiDBLite consensus disorder prediction 487 501 - -
Sto13g1769 510 MobiDBLite consensus disorder prediction 14 152 - -
Sto13g1769 510 PANTHER CYCLIC DOF FACTOR 2 1 506 IPR045174 GO:0003700|GO:0006355
Sto13g1769 510 MobiDBLite consensus disorder prediction 288 308 - -
Sto13g1769 510 ProSitePatterns Zinc finger Dof-type signature. 154 190 IPR003851 GO:0003677|GO:0006355
Sto13g1769 510 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 1 506 - -
Sto13g1769 510 MobiDBLite consensus disorder prediction 124 150 - -
Sto13g1769 510 MobiDBLite consensus disorder prediction 59 94 - -
Sto13g1769 510 MobiDBLite consensus disorder prediction 389 409 - -
Sto13g1769 510 ProSiteProfiles Zinc finger Dof-type profile. 152 206 IPR003851 GO:0003677|GO:0006355
Sto13g1769 510 MobiDBLite consensus disorder prediction 410 433 - -
Sto13g1769 510 Pfam Dof domain, zinc finger 149 206 IPR003851 GO:0003677|GO:0006355
Sto13g1769 510 MobiDBLite consensus disorder prediction 100 123 - -
Sto13g1769 510 MobiDBLite consensus disorder prediction 479 510 - -
Sto13g1769 510 MobiDBLite consensus disorder prediction 389 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g1769 Sto-Chr13 25136405 25139584 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g1769 5 507 C2C2-Dof Transcription Factor Family AT5G39660 44.007 1.30e-111 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Sto13g1769 zf-Dof 6.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g1769 - - gmx:100784308 750.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g1769 13 25136405 25139584 Sto3g1560 3 11555816 11556812 ECH
Sto13g1769 13 25136405 25139584 Sto12g0910 12 5640707 5643275 ECH
Sto13g1769 13 25136405 25139584 Sto13g1769 13 25136405 25139584 ECH
Sto8g2802 8 20315196 20317580 Sto13g1769 13 25136405 25139584 ECH
Sto11g0936 11 9845216 9847904 Sto13g1769 13 25136405 25139584 ECH
Sto6g3012 6 37228473 37231053 Sto13g1769 13 25136405 25139584 ECH