Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g0198 ATGTCTGAGACGACGGATCCGGCTATCACGCTCTTCGGTCGCAAGATTCCCTTGCCGGAGTCTCACATTCCGGCCAACTCTCCGGTCACTTCTCAGATTCCGGCCAAGTCCAAAACCAAGGATGTTTGTGAAGAGAAATGTGAGcaagaaaatgagaagaaaggCAATTCCAATCCTATGGAAGATCATAAAACAGAAGAAATTACTAGTACTACTGCAGATCAAGATAATAAAGTAATGAAGAAACCGGACAAGATTGTTCCGTGTCCGCGCTGTAACAGTCTCGAAACGAAGTTTTGTTACTTCAACAACTACAATGTCAATCAACCTCGCCATTTTTGCAAGAATTGTCAGAGGTATTGGACGGCCGGCGATGCTTCTCCTCTATGTGAATCCATGGAGGCAATGCTCAATCTTAGAGACAAGAAAACAAGTGTTGAGGCTGAAAATGGGAAGGAACCATCCTTATGTGGCTCTTTAGTGACTAATGAggttaatactaataataatgcATCAAATCATTTGCAAATTTACCCTGTTCCTCCATGGATGTTTCCTTGGAATAACCCGGATCGGAACAATGTTTCTCCGGCTCCAATTCCGTGGTATCCGACGCCGATGGTGGTGGTTCCCGGCATGTGTCCACCAAACATTCCTTTACAGTTTCCATATTGGGGAGGGACACCTGTCTGGCCGGACACCGGATCCGGGGCGGTCTCAACCGGATCCAATCGTTGTCATTCGCTTTCTTGCTCAACAAGTAACATCTTTTGCTCCAGCAATGGCTCCCCAACCCTAGGAAAACACTCTAGGGACACAATTTTCAGTGAAGAGGACAAGTCAGAAAAGTGTGTTTTGGTTCCAAAGACACTTAGAATTGATGATCCAAATGAGGCCTCAAAAAGCCCTATATGGGCTGCATTAGGGATCAAGCCCGGCAAGAAAGAGTGCGAATCCGATGGTTCCGGCGCCGGCGGTGGTGGCCGTGTCTCTCGAATCTTGGAAGCTAACCCGGCGGCTATATCTCGTGCCCATGCATTCCAGGAGAGCATATGA 1056 0.4583 MSETTDPAITLFGRKIPLPESHIPANSPVTSQIPAKSKTKDVCEEKCEQENEKKGNSNPMEDHKTEEITSTTADQDNKVMKKPDKIVPCPRCNSLETKFCYFNNYNVNQPRHFCKNCQRYWTAGDASPLCESMEAMLNLRDKKTSVEAENGKEPSLCGSLVTNEVNTNNNASNHLQIYPVPPWMFPWNNPDRNNVSPAPIPWYPTPMVVVPGMCPPNIPLQFPYWGGTPVWPDTGSGAVSTGSNRCHSLSCSTSNIFCSSNGSPTLGKHSRDTIFSEEDKSEKCVLVPKTLRIDDPNEASKSPIWAALGIKPGKKECESDGSGAGGGGRVSRILEANPAAISRAHAFQESI 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g0198 351 Pfam Dof domain, zinc finger 84 124 IPR003851 GO:0003677|GO:0006355
Sto13g0198 351 MobiDBLite consensus disorder prediction 38 77 - -
Sto13g0198 351 MobiDBLite consensus disorder prediction 18 77 - -
Sto13g0198 351 ProSiteProfiles Zinc finger Dof-type profile. 87 141 IPR003851 GO:0003677|GO:0006355
Sto13g0198 351 PANTHER CYCLIC DOF FACTOR 2 1 124 IPR045174 GO:0003700|GO:0006355
Sto13g0198 351 PANTHER CYCLIC DOF FACTOR 2 125 350 IPR045174 GO:0003700|GO:0006355
Sto13g0198 351 PANTHER CYCLIC DOF FACTOR 3-LIKE 1 124 - -
Sto13g0198 351 PANTHER CYCLIC DOF FACTOR 3-LIKE 125 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g0198 Sto-Chr13 1689601 1691524 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto13g0198 1 351 C2C2-Dof Transcription Factor Family AT5G62430 34.456 2.91e-50 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Sto13g0198 zf-Dof 5.7e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto13g0198 - - pvu:PHAVU_004G054000g 305.834
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g0198 13 1689601 1691524 Sto13g0198 13 1689601 1691524 ECH