Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g0142 ATGGGTCATAACCAGAAGCCTTTGATCTACGCCTTCGTTTCTCGTGGGCCTGTGATTCTTGCCGACTACACTGAATTCAGTGGCAACTTCAATTCCATCGCCTTTCAGTGCCTCCAGAAGCTTCCGGCTACCAACAACAAGTTCACTTACAACTGCGATGGACACACCTTCAATTACCTAGTTGATAATGGCTACACCTATTGTGTTGTTGCAGATGAATCAATCGGAAGACAGGTACCCATGGCTTTTCTAGAGCGTGTCAAGGATGACTTTGTGTCAAAGTATGGTAGTGGAAAGGCTGCTACAGCTGCTGCCAACAGCCTTAACAAGGAATTTggGCCAAAATTGAAGGAACACATGCAATACTGTGTTGATCATCCTGAAGAGATAAGCAAACTTGCAAAGGTGAAAGCTCAGGTTTCAGAAGTTAAAGGTGTAATGATGGAGAATATTGAAAAGgttttggaCAGAGGAGAAAAGATAGAGCTTCTGGTGGACAAGACTGAGAACCTTCATCACCAGGCACAAGACTTTAGGAATTCAGGAACCAAAATTCGTCGAAAGATGTGGCTGCAAAACATGAAGATCAAGCTGATTGTGTTGGGAATTTTGATAGCCCTGATCCTCATAATAGTTCTTTCTGTTTGTCATGGGTTCAACTGTGGAAAATGA 672 0.4241 MGHNQKPLIYAFVSRGPVILADYTEFSGNFNSIAFQCLQKLPATNNKFTYNCDGHTFNYLVDNGYTYCVVADESIGRQVPMAFLERVKDDFVSKYGSGKAATAAANSLNKEFGPKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHHQAQDFRNSGTKIRRKMWLQNMKIKLIVLGILIALILIIVLSVCHGFNCGK 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g0142 223 Gene3D - 130 216 - -
Sto13g0142 223 ProSitePatterns Synaptobrevin signature. 150 169 IPR001388 GO:0016021|GO:0016192
Sto13g0142 223 SUPERFAMILY SNARE fusion complex 127 194 - -
Sto13g0142 223 CDD R-SNARE 132 190 - -
Sto13g0142 223 Pfam Synaptobrevin 131 217 IPR042855 -
Sto13g0142 223 Pfam Regulated-SNARE-like domain 36 112 IPR010908 -
Sto13g0142 223 PRINTS Synaptobrevin signature 137 156 IPR001388 GO:0016021|GO:0016192
Sto13g0142 223 PRINTS Synaptobrevin signature 157 176 IPR001388 GO:0016021|GO:0016192
Sto13g0142 223 PRINTS Synaptobrevin signature 193 212 IPR001388 GO:0016021|GO:0016192
Sto13g0142 223 PANTHER SYNAPTOBREVIN, LONGIN-LIKE DOMAIN PROTEIN-RELATED 5 171 - -
Sto13g0142 223 ProSiteProfiles Longin domain profile. 12 116 IPR010908 -
Sto13g0142 223 PANTHER SNARE PROTEINS 5 171 - -
Sto13g0142 223 SMART Longin_2 33 115 IPR010908 -
Sto13g0142 223 SUPERFAMILY SNARE-like 8 123 IPR011012 -
Sto13g0142 223 ProSiteProfiles v-SNARE coiled-coil homology domain profile. 132 192 IPR042855 -
Sto13g0142 223 CDD Longin 9 123 IPR010908 -
Sto13g0142 223 Gene3D Longin domain 2 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g0142 Sto-Chr13 1227956 1233522 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g0142 13 1227956 1233522 Sto13g0142 13 1227956 1233522 ECH