Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g0109 ATGGCGCTCAGAGACCTACAGCTAACTTCTCGTTCCGTTGGCCGCGAAACCTCCTCCGCCGATGATTCCGGCGACCTCGAGGATGTTCGCCTTCTGGACTCCTACGACAGTACCGATTGCTCCAATGGATCTGATCAACTTCAAGACGGAATCAGGCGAATTCAGGTCGGAGTCTCTGGAATGACGTGCGCTGCTTGCTCCAATTCCGTCGAAGCAGCTCTCAATGCCATTGATGGCGTGCTCAGTGCTTCCGTCGCTCTGCTTCAGAACAAGGCGGACGTCGTTTTCAACTCCAGTCTGGTCAAGGATGAAGACATTAAAAATGCAATTGAAGATGCAGGGTTTGACGCAGACATATTACCTGAACCCAGTACACTTGGAAAAAAGCAGCAACAAACCCTGGTGGGACAGTTCACCATTGGGGGTATTACATGTGCGGCATGCGTAAATTCTGTTGAAGGTATTTTGAGGAATCTTACGGGGGTGAAAAGGGCTGTGGTTGCTTTGGCTACTTCCTTAGGAGAAGTTGAATATGATCCTACAATAATTAGTAAAGATGATATAATCAATTCAATTGAAGATGCTGGTTTTGAAGCTTCATTTGTACAGAGTAGTGAgcaagataaaataatttttggggttGTTGGTTTATACAGCCTGATTGATGCGCAAGTTCTAGAAGGCATGCTGAGCAGCATGAAAGGAGTAAGGCAGTTCCGTGTTGACCAGATACTAAGTGAACTGGAAGTTCTTTTTGATCCTGAAGTTACCAGTTCTAGATCCTTAGTTGATGGAGTTGAAGGGGGAGCCAATGGGAAGTTTAAATTACATGTAAAAAACCCATATGCAAGAATGGCCTCGAAAGATGTTGAAGAGACCTCAACTATGTTTCGACTTTTTATCTCAAGCCTGTTTCTTAgtATTCCTCTCTTTTTCATAGGTGTAGTTTGTCCTCATATACCAATTCTATATTCCTTACTACTCTGGAGATGTGGACCTTTCCTCATGGATGATTGGTTGAAGTGGGCATTAGTGAGTCTTATCCAATTTGTAATTGGGAAGCGCTTCTACATTGCGGCAGGCAGAGCTCTTAGAAATGGTTCAACTAACATGGACGTTTTGGTTGCTTTGGGAACTACAGCTTCTTATGTCTATTCTGTTTGCGCTCTTCTTTATGGTGCTCTTACTGGATTTTGGTCTCCAACATATTTTGAAACAAGTGCTATGCTCATAACATTTGTATTGTTGGGGAAGTATCTGGAATGTCTTGCCAAGGGAAAGACATCAGATGCCATAAAGAAGTTAGTAGAACTTGCTCCAGCAACAGCTTTATTGGTAGTCAAAGATAAAGGCGGTAAACCTGTTGAAGAAAGGGAAATAGATTCTTTGCTCATTCAGCCTGGTGATACATTAAAAGTTCTTCCTGGTGCAAAGATTCCTGCTGATGGTATGGTTACTTGGGGCTCAAGTTATGTAAATGAGAGTATGGTAACAGGTGAATCTGTACCTGTTTTGAAGGAGGTGAATGCATCCGTTATTGGAGGCACTATAAATTTACATGGTGTCCTTCACATTGAAGCCACCAAAGTAGGAACTGACACAGTTTTGAGTCAGATAATTAGTTTGGTAGAGACAGCCCAGATGTCCAAAGCCCCCATTCAGAAATTTGCTGATTATGTAGCAAGCATTTTTGTTCCTACAGTTGTTGCTTTGGCATTATTGACATTATTGGGTTGGTACATTGCTGGAGCTCTAGGAGCTTACCCTGATGATTGGTTGCCGAAAAATGGAAATCACTTTGTCTTTGCCCTTATGTTTGCAATATCTGTGGTAGTGATTGCTTGTCCCTGTGCACTAGGCTTGGCAACACCAACTGCTGTCATGGTGGCAACAGGGGTTGGGGCTAATAATGGTGTGTTAATTAAAGGAGGAGATGCCTTGGAAAGGGCTCAGACAGTGAAGTATGTGATATTTGATAAAACAGGCACACTAACTCAGGGAAAAGCCACTGTTACTACAGCAAAGGTATTCACCGGAATGGACCGTGGGGAGTTTCTTACACTGGTGGCTTCTGCTGAGGCTAGCAGTGAACACCCACTGGCAAAAGCAATAGTTGAATATGCACGTCATTTCCATTTCTTTGATGAGTCATCAGCAACCACTGGGACTCAAAACGATGTTAAGGAGTCAAAGGCTGGATGGCTTTTTGATGTCTCAGACTTCTCTGCTCTTCCAGGAAGAGGAGTTCAGTGCTTTTTAGATGGGAAGCGTATTTTGGTTGGTAACAGGAAGCTAATGGTGGAAAACGGCATAAATATTCCAACTCAAGTGGAAAATTTTGTGGTGGAACTAGAAGAAAGTGCGAAGACGGGGATACTAGTTGCCTACGACGATAAATTAACTGGTGTTTTAGGGGTTGCAGATCCTCTAAAAAGAGAAGCTTCTGTGGTTATTGAAGGCCTCCAGAAAATGGGTGTCAGACCTGTTATGGTTACAGGAGATAACACGAGGACAGCTCAGGCTGTTGCCAAGGAGCATGTTCTAATAACTTTGGATTATTGTGATTTCAAGGCTGTGCTTCTTAGTGTCAGCTTACAGCATCTGGTTGGCATTGAAGATGTTAGGGCAGAGGTTATGCCTGCAGGAAAAGCTGAGGTTGTCCGTTCATTCCAAGAAGATGGAAGCATAGTTGCAATGGTGGGTGACGGTATCAATGACTCTCCGGCATTAGCCGCCGCAGACGTAGGGATGGCAATTGGAGCCGGGACAGATATTGCAATAGAAGCCGCTGATTATGTACTGATGAGAAATAATTTGGAAGATGTGATCATAGCCATTGAAATCTCCAGGAAGACCTTTTCTCCTATTCGATTAAATTATGTATTTGCAATGGCTTACAATGTTGTTGCTATACCAGTTGCAGTTGGAGTCTTCTTCCCTTCACTAGGGATCAAGCTTCCCCCATGGGTTGCTGGTGCCTGCATGGCTCTCTCATCTGTAAGTGTTGTTTGCTCTTCTTTGCTTCTCAGGAGATATAGAAGACCCAGGCTTACTACAATACTTGAAATAATTGTAGAATAA 3081 0.4314 MALRDLQLTSRSVGRETSSADDSGDLEDVRLLDSYDSTDCSNGSDQLQDGIRRIQVGVSGMTCAACSNSVEAALNAIDGVLSASVALLQNKADVVFNSSLVKDEDIKNAIEDAGFDADILPEPSTLGKKQQQTLVGQFTIGGITCAACVNSVEGILRNLTGVKRAVVALATSLGEVEYDPTIISKDDIINSIEDAGFEASFVQSSEQDKIIFGVVGLYSLIDAQVLEGMLSSMKGVRQFRVDQILSELEVLFDPEVTSSRSLVDGVEGGANGKFKLHVKNPYARMASKDVEETSTMFRLFISSLFLSIPLFFIGVVCPHIPILYSLLLWRCGPFLMDDWLKWALVSLIQFVIGKRFYIAAGRALRNGSTNMDVLVALGTTASYVYSVCALLYGALTGFWSPTYFETSAMLITFVLLGKYLECLAKGKTSDAIKKLVELAPATALLVVKDKGGKPVEEREIDSLLIQPGDTLKVLPGAKIPADGMVTWGSSYVNESMVTGESVPVLKEVNASVIGGTINLHGVLHIEATKVGTDTVLSQIISLVETAQMSKAPIQKFADYVASIFVPTVVALALLTLLGWYIAGALGAYPDDWLPKNGNHFVFALMFAISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQTVKYVIFDKTGTLTQGKATVTTAKVFTGMDRGEFLTLVASAEASSEHPLAKAIVEYARHFHFFDESSATTGTQNDVKESKAGWLFDVSDFSALPGRGVQCFLDGKRILVGNRKLMVENGINIPTQVENFVVELEESAKTGILVAYDDKLTGVLGVADPLKREASVVIEGLQKMGVRPVMVTGDNTRTAQAVAKEHVLITLDYCDFKAVLLSVSLQHLVGIEDVRAEVMPAGKAEVVRSFQEDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNNLEDVIIAIEISRKTFSPIRLNYVFAMAYNVVAIPVAVGVFFPSLGIKLPPWVAGACMALSSVSVVCSSLLLRRYRRPRLTTILEIIVE 1026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g0109 1026 PRINTS P-type cation-transporting ATPase superfamily signature 493 507 - -
Sto13g0109 1026 PRINTS P-type cation-transporting ATPase superfamily signature 657 671 - -
Sto13g0109 1026 PRINTS P-type cation-transporting ATPase superfamily signature 802 813 - -
Sto13g0109 1026 PRINTS P-type cation-transporting ATPase superfamily signature 824 834 - -
Sto13g0109 1026 PRINTS P-type cation-transporting ATPase superfamily signature 900 919 - -
Sto13g0109 1026 PRINTS P-type cation-transporting ATPase superfamily signature 923 935 - -
Sto13g0109 1026 Gene3D - 51 122 - -
Sto13g0109 1026 SFLD Haloacid Dehalogenase 639 952 - -
Sto13g0109 1026 Gene3D - 425 547 - -
Sto13g0109 1026 SFLD p-type atpase 639 952 IPR044492 -
Sto13g0109 1026 ProSitePatterns Heavy-metal-associated domain. 58 88 IPR017969 GO:0046872
Sto13g0109 1026 SUPERFAMILY HAD-like 656 1006 IPR036412 -
Sto13g0109 1026 CDD P-type_ATPase_Cu-like 298 996 - -
Sto13g0109 1026 ProSitePatterns Heavy-metal-associated domain. 140 169 IPR017969 GO:0046872
Sto13g0109 1026 CDD HMA 137 200 IPR006121 GO:0046872
Sto13g0109 1026 Pfam Heavy-metal-associated domain 138 198 IPR006121 GO:0046872
Sto13g0109 1026 Pfam Heavy-metal-associated domain 58 116 IPR006121 GO:0046872
Sto13g0109 1026 CDD HMA 58 117 IPR006121 GO:0046872
Sto13g0109 1026 MobiDBLite consensus disorder prediction 1 26 - -
Sto13g0109 1026 SUPERFAMILY Calcium ATPase, transduction domain A 457 543 IPR008250 -
Sto13g0109 1026 ProSiteProfiles Heavy-metal-associated domain profile. 209 267 IPR006121 GO:0046872
Sto13g0109 1026 PANTHER ATP7, ISOFORM B 16 1019 - -
Sto13g0109 1026 PRINTS Copper-transporting ATPase 1 signature 53 78 - -
Sto13g0109 1026 PRINTS Copper-transporting ATPase 1 signature 79 102 - -
Sto13g0109 1026 PRINTS Copper-transporting ATPase 1 signature 108 128 - -
Sto13g0109 1026 Pfam E1-E2 ATPase 440 636 - -
Sto13g0109 1026 SUPERFAMILY HMA, heavy metal-associated domain 133 205 IPR036163 GO:0046872
Sto13g0109 1026 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 371 845 IPR027256 GO:0006812|GO:0016021|GO:0019829
Sto13g0109 1026 Pfam haloacid dehalogenase-like hydrolase 653 914 - -
Sto13g0109 1026 ProSitePatterns E1-E2 ATPases phosphorylation site. 659 665 IPR018303 -
Sto13g0109 1026 Gene3D - 756 808 IPR023299 GO:0000166
Sto13g0109 1026 Gene3D - 664 755 IPR023299 GO:0000166
Sto13g0109 1026 SUPERFAMILY Calcium ATPase, transmembrane domain M 390 989 IPR023298 -
Sto13g0109 1026 TIGRFAM TIGR00003: copper ion binding protein 137 199 IPR006122 GO:0005507
Sto13g0109 1026 TIGRFAM TIGR00003: copper ion binding protein 54 117 IPR006122 GO:0005507
Sto13g0109 1026 Gene3D - 624 957 IPR023214 -
Sto13g0109 1026 ProSiteProfiles Heavy-metal-associated domain profile. 53 119 IPR006121 GO:0046872
Sto13g0109 1026 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 876 984 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Sto13g0109 1026 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 410 712 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Sto13g0109 1026 PANTHER HEAVY METAL P-TYPE ATPASE 16 1019 - -
Sto13g0109 1026 SUPERFAMILY HMA, heavy metal-associated domain 48 122 IPR036163 GO:0046872
Sto13g0109 1026 Gene3D - 133 201 - -
Sto13g0109 1026 ProSiteProfiles Heavy-metal-associated domain profile. 135 201 IPR006121 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g0109 Sto-Chr13 933148 939922 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g0109 13 933148 939922 Sto13g0109 13 933148 939922 ECH