Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto13g0105 ATGGAAGCAACAACAAAATCTCTCATCTTCTTCCATTTCCTAATTCTTCTCCTCTTACTTTCTCCttctttcaatttggtccttgcttCTTCAAAGAAGTTACCTTCCGTTAATACCAAAAGCCACCATTATCACCGATCATTACGCCGGCTAGATGCCCTCAAAGCCTCCATTGCTTCTCCACTACCACCACCATCGTCGCCGCCACCGGAGGGTGGGAGTGATCCAAGAATATACCTTGTGACATCTTATGGTGCAGATCCAACGGGGCAGGTGGACAGTACAGAAGCTCTTCTTGCAGCCATGGCAGATGCAGTGAATGGTTCAAATTATAAAGGTTACATGATGATGCAGGGCATTACTAATGTTGGAGGTGCTCAGATTAATCTTCAAGGTGGGAATTACTTGATCTCCCGGCCGCTCCGGTTGCCGGTCACCGGCGTCGGAAACCTTCAGATCCATGGAGGAACAATAAGAGCCTCAGATACTTTTCCATCAGATGGGTATCTCATAGATTTATCACCCACAAATGACaaaacttcatcttcttcaccctACAATTATGAGTACATAACATTTAAGGACCTTTTATTGGACTCTAACTTCAAAGGAGGGGGCATTTCAGTCATAAACTCCCTAAGAATTGGCATAGACAATTGCTACATCACTCACTTCACCACCAATGGAATTCTGGTCCAAAGTGGCCATGAGACCTACATCCGGAACACCTTCATCGGCCAACACATCACGGCCGGCGGGGACAAAGGCGAGAGGGAATTTTCCGGCACCGGGATAACGTTGCAAGGAAATGACAATGCTGTGACAGATGTGGTCATTTTTTCTGGTGCCATAGGGATAATGGTCACAGGCCAGGCAAATATAATTTCTGGGGTACATTGTTATAATAAAGCCTCAGGATTTGGAGGTACAGGGATTTATTTGAGACTTCCTAGCCTAACACAAACTAGGATTGTGAATTCTTACATGGATTACACAAGTATTGTGGCTGAAGACCCTTTTCAGCTTCACATTTCTAGCACTTTTTTCCTTGGAGATGCCAATATTGTCCTAAAATCCATCAAAGGGGTCGTTAGTGGGATTAATATTGTTGATAACATCTTTTCTGGGTCTAATAGTGGGGTTGAGATTGTTCATCTTGATCAATCAAAAGGGGGTTTTGAGAATGTTGAGCAAGTTTTTGTGGATAGGAATGTGGCCAAAGGGATGAACATGAAGAGCACAATTGGGAGGGTTTCTTTGCAAGGAAATGGGACATCATCATGGGTGGTTGATTTTAATGAGGTTCTGCTTTTTCCTAACCTTATTAAACATGTTCAATACTCGCTGAGCATCGCGGCGGGTGACGGTTTCCCGGGACACGTTCTGAGGAATGTGTCGGATAACCGAGTCGTGATCGAGACGAGTGAGGCCGTGACGGGGAATTTGTATGTGGAAGTGGATCAAGGAAGGTGA 1473 0.4352 MEATTKSLIFFHFLILLLLLSPSFNLVLASSKKLPSVNTKSHHYHRSLRRLDALKASIASPLPPPSSPPPEGGSDPRIYLVTSYGADPTGQVDSTEALLAAMADAVNGSNYKGYMMMQGITNVGGAQINLQGGNYLISRPLRLPVTGVGNLQIHGGTIRASDTFPSDGYLIDLSPTNDKTSSSSPYNYEYITFKDLLLDSNFKGGGISVINSLRIGIDNCYITHFTTNGILVQSGHETYIRNTFIGQHITAGGDKGEREFSGTGITLQGNDNAVTDVVIFSGAIGIMVTGQANIISGVHCYNKASGFGGTGIYLRLPSLTQTRIVNSYMDYTSIVAEDPFQLHISSTFFLGDANIVLKSIKGVVSGINIVDNIFSGSNSGVEIVHLDQSKGGFENVEQVFVDRNVAKGMNMKSTIGRVSLQGNGTSSWVVDFNEVLLFPNLIKHVQYSLSIAAGDGFPGHVLRNVSDNRVVIETSEAVTGNLYVEVDQGR 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto13g0105 490 PANTHER POLYGALACTURONASE QRT3 21 489 IPR039279 GO:0004650
Sto13g0105 490 PANTHER POLYGALACTURONASE QRT3 21 489 - -
Sto13g0105 490 Pfam Pectate lyase superfamily protein 81 308 IPR024535 -
Sto13g0105 490 Gene3D - 81 448 IPR012334 -
Sto13g0105 490 SUPERFAMILY Pectin lyase-like 61 464 IPR011050 -
Sto13g0105 490 SMART pbh1 212 234 IPR006626 -
Sto13g0105 490 SMART pbh1 148 173 IPR006626 -
Sto13g0105 490 SMART pbh1 269 290 IPR006626 -
Sto13g0105 490 SMART pbh1 364 385 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto13g0105 Sto-Chr13 874873 877388 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g0105 13 874873 877388 Sto13g0105 13 874873 877388 ECH