Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1012 ATGGAAAAAGATACTGCTTCTGGTGCTGAATTGCCTCAGAGACCTCATGGTCTACTGCGAGATCAGATTCAGCTAGTAAAAAGAAAGGACCTTGATCGTTATGAAATTGTCTCAATCCCAGATTCTCTGTCATTTGAGAAAGGTTTCTTCATAGTTATTCGTGCATGCCAATTGCTGGCTCAAAagaatgatgggataatattaGTAGGAGTTGCAGGACCCTCTGGAGCAGGGAAAACTGTTTTCACCGAGAAGGTCCTCAACTTCATGCCAAGTGTCGCAGTCATAACAATGGACAACTATAATGATTCTAGTCGAGTCATAGATGGCAACTTTGATGATCCTCGGTTGACAGATTATGATACCTTGCTCGAAAACATAAAGGGTCTTAAAGCAGGGAGGACAGTTCAGGTTCCAATATATGATTTCAAGTCTAGCTCTTGCATAGGTTACAGGACTGTTGAAGTCCCTAGCTCTCGCATCGTCATCATAGAAGGAATCTATGCTTTAAGTGAAAGATTACGGCCTTTGCTTGATCTTCGTCTGTCTATCACTGGTGGAGTACACTTCGACCTTGTTAAGCGGGTCTTGCGGGATATTCAACGTGCTGAATCCCACCTACATATTGAAGGTGATCTTTGCTTTGTCATCACAATAAGGGCTGTGACAGTGGAACAGATCAAAGCTGTTATTGCTGCAGACCATAAAGAAGCCACAGAGGAAACGTATGACATATATCTTCTACCCCCTGGGGAAGATCCTGAAGCATGTCAATCATACTTGAGGATGAGAAACCGGGATGGAAAGTACAATCTTATGTTTGAGgaGTGGGTTACAGACAGTCCATTTATAATATCTCCTAGAATTACTTTTGAGGTCAGTGTGCGCCTTCTTGGAGGGCTGATGGCCTTGGGATACACAATTGCAGCTATCTTGAAAAGAAACAGCCATGTCTTTGCTGATGATAAAGtgtctgtgaaaactgattggtTGGAACAACTTAATCGCCTGTATGTTCAGGTGCAAGGGAGAGATAGAAACTATGTTAAATATGTGGCAGAGAAACTGGGGTTGGATGGTTCATATGTTCCTCGCACTTACATTGAACAAATTCATCTGGAAAAGCTTATAAATGATGTGATGGCACTGCCAGATGATCTGAAGACAAAACTCAGTATAGATGATGATTTGGTTTTGAGCCCCAAAGAAGCCCTGTCCAGAGCTTCTGCAGATAGGAGAATGAAGTATCTTAATCGCAATATTTCCACTCATATTCAAATGGAAGAGATAAGAGCCTGTCTAAGTTGA 1308 0.4083 MEKDTASGAELPQRPHGLLRDQIQLVKRKDLDRYEIVSIPDSLSFEKGFFIVIRACQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNFMPSVAVITMDNYNDSSRVIDGNFDDPRLTDYDTLLENIKGLKAGRTVQVPIYDFKSSSCIGYRTVEVPSSRIVIIEGIYALSERLRPLLDLRLSITGGVHFDLVKRVLRDIQRAESHLHIEGDLCFVITIRAVTVEQIKAVIAADHKEATEETYDIYLLPPGEDPEACQSYLRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVSVRLLGGLMALGYTIAAILKRNSHVFADDKVSVKTDWLEQLNRLYVQVQGRDRNYVKYVAEKLGLDGSYVPRTYIEQIHLEKLINDVMALPDDLKTKLSIDDDLVLSPKEALSRASADRRMKYLNRNISTHIQMEEIRACLS 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1012 435 Gene3D - 217 375 - -
Sto12g1012 435 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 58 200 IPR027417 -
Sto12g1012 435 Pfam Phosphoribulokinase / Uridine kinase family 69 201 IPR006083 GO:0005524|GO:0016301
Sto12g1012 435 PANTHER URIDINE-CYTIDINE KINASE C-LIKE ISOFORM X1 7 203 - -
Sto12g1012 435 PANTHER URIDINE-CYTIDINE KINASE C-LIKE ISOFORM X1 218 423 - -
Sto12g1012 435 SUPERFAMILY CYTH-like phosphatases 223 370 IPR033469 -
Sto12g1012 435 PRINTS Uridine kinase signature 66 83 - -
Sto12g1012 435 PRINTS Uridine kinase signature 133 148 - -
Sto12g1012 435 PRINTS Uridine kinase signature 189 199 - -
Sto12g1012 435 Pfam CYTH domain 234 367 IPR023577 -
Sto12g1012 435 CDD UMPK_like 68 203 - -
Sto12g1012 435 ProSiteProfiles CYTH domain profile. 208 373 IPR023577 -
Sto12g1012 435 Gene3D - 43 212 IPR027417 -
Sto12g1012 435 PANTHER URIDINE KINASE 7 203 - -
Sto12g1012 435 PANTHER URIDINE KINASE 218 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g1012 Sto-Chr12 6297863 6301535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g1012 67 199 PRT Gene Family AT5G40870 28.873 2.72e-12 66.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1668 3 12740486 12748579 Sto12g1012 12 6297863 6301535 ECH
Sto12g1012 12 6297863 6301535 Sto12g1012 12 6297863 6301535 ECH