Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0995 ATGGGGGAATTCAATACTCATGATGCTATTCCTAGTAAGGGTTATTTATGTCTTTTGAGGGCATGGCATTGTAGTTTTGTGAAGGCGCCGGGGATGTTTTCGtcaattggaaaagaaaatagtAGAAATACAAGATACAGTAAGCAAGCGCTGATTTTCGACGACATGCAGGATATACATTCTATGTCAGCAGGAAGATTTTTCGACGGTGGCGGCGGCGGCAGCGGAGGAGACCGGAGGATGAGGCAACACCACCACCAGGCCTTGAAGTGCCCAAGGTGTGACTCCCTCAACACCAAGTTCTGCTACTACAACAATTACAACCTCTCTCAGCCACGTCATTTCTGCAAGAGCTGCCGTCGCTACTGGACGAAAGGCGGCGTCCTCCGCAACGTCCCCGTCGGTGGCGGTTGCCGCAAATCCAAGCGCTCCTCCAAGCCCAAAATCTCTTCCTCCACAGAACCTCCTCCTACGCCAGCACCGCCGCAGCAAGATCACAACAACTCCAACTCACATTCCAGTAGCGTAAGCTCGAGCGTGACCGCCGCCACGACGGAGGCAGTGTCGGCGCCTTCATCGACGAACGGCGAGGTGTTGGAGAATATACAAGACGAGTCTCATCATCAGTTGGTGAAGCCTAACTTGGAATCGGGGGTGATGGAtcaaggaggaggaggagattgTGGTATATTCTCGGAGATAGGGAGCTTTACGAGCTTGGTCACTTCAACGCACGAGGCAATGTCGTTTGGATTTGCCGAGGCGTCGTCGTTTCGTTTCGGTGGTACTGGTACAACGACGCAGCACGGAGTTGGAGGAGGGTTGGGGAATGATTTGTTATTATCAGGTGAGTGGGAGGCGCAGCACAAGGGGATGGGGATGATGGGGACGACTGAGATCATGCCGCTTGATCTGTCGGCGTTGCAGAATAAAAGCGGGAATGGCGGGAGTTTCGGATCGTTGGATTGGCAAGGAAGCGGAGATGAAGGTTTGTTTGATCTTCCTAACACCGTTGATCATGCATACTGGAGTCACACTCATTGGGGTGATCAAGACAATCCCACTCTCTTTCATCTTCCTTGA 1083 0.5051 MGEFNTHDAIPSKGYLCLLRAWHCSFVKAPGMFSSIGKENSRNTRYSKQALIFDDMQDIHSMSAGRFFDGGGGGSGGDRRMRQHHHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKSKRSSKPKISSSTEPPPTPAPPQQDHNNSNSHSSSVSSSVTAATTEAVSAPSSTNGEVLENIQDESHHQLVKPNLESGVMDQGGGGDCGIFSEIGSFTSLVTSTHEAMSFGFAEASSFRFGGTGTTTQHGVGGGLGNDLLLSGEWEAQHKGMGMMGTTEIMPLDLSALQNKSGNGGSFGSLDWQGSGDEGLFDLPNTVDHAYWSHTHWGDQDNPTLFHLP 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0995 360 Pfam Dof domain, zinc finger 87 143 IPR003851 GO:0003677|GO:0006355
Sto12g0995 360 PANTHER DOF ZINC FINGER PROTEIN 4 74 347 - -
Sto12g0995 360 MobiDBLite consensus disorder prediction 164 195 - -
Sto12g0995 360 ProSitePatterns Zinc finger Dof-type signature. 91 127 IPR003851 GO:0003677|GO:0006355
Sto12g0995 360 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 74 347 IPR045174 GO:0003700|GO:0006355
Sto12g0995 360 ProSiteProfiles Zinc finger Dof-type profile. 89 143 IPR003851 GO:0003677|GO:0006355
Sto12g0995 360 MobiDBLite consensus disorder prediction 134 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0995 Sto-Chr12 6199939 6201342 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0995 78 360 C2C2-Dof Transcription Factor Family AT5G60850 40.397 6.01e-53 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Sto12g0995 zf-Dof 3.3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0995 - - twl:120016106 277.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0995 12 6199939 6201342 Sto12g0995 12 6199939 6201342 ECH