Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0991 atgggAAGAGGGAGGGTTGAGCTGAAGAGAATAGAGAACAAAATCAATAGGCAAGTTACATTCGCTAAGAGGAGAAATGGTCTTCTCAAGAAGGCTTATGAGCTCTCTGTCCTCTGTGATGCTGAGGTTGCCCTCATCATCTTCTCCAATCGTGGCAAGCTCTATGAGTTCTGTAGTGGCCCCAGCATGATGAAAACACTTGAGAAATACCAAAAGTACAGTTATGGTGTTCTGGAGTCCAACCTCCCAATGCATGACACTCAGACCCAATATATGCTTGACCAGCTTGCTGATCTTCAGAACCggGAAAAAGCGCTTGATGAAACTAATAAAGCTTTAAGGACTAAGTTGGAAGAAAAGAACAACTCGCAAGTTCCAGAAAGACTTGCTTGGGAAGGAGCAGGAGGCTCTGACATTCACTACACTCGCTTTCCTCCTCAATCTGAACCCTTTTTCCAGCCTTTGGGAGCCAATCCCAATTTGCAAATtggATATAATCATCATGTGGGACATGAGGATGTAAACGTTGGAGGTGCAGCCCTAAACATTCATGGATTCGTGTCTGGATGGATGCTTTAA 579 0.4335 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSGPSMMKTLEKYQKYSYGVLESNLPMHDTQTQYMLDQLADLQNREKALDETNKALRTKLEEKNNSQVPERLAWEGAGGSDIHYTRFPPQSEPFFQPLGANPNLQIGYNHHVGHEDVNVGGAALNIHGFVSGWML 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0991 192 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Sto12g0991 192 Coils Coil 96 123 - -
Sto12g0991 192 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Sto12g0991 192 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Sto12g0991 192 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Sto12g0991 192 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Sto12g0991 192 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Sto12g0991 192 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Sto12g0991 192 PANTHER SERUM RESPONSE FACTOR HOMOLOG 85 180 - -
Sto12g0991 192 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 86 - -
Sto12g0991 192 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 1 86 - -
Sto12g0991 192 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 85 180 - -
Sto12g0991 192 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Sto12g0991 192 Gene3D - 13 76 IPR036879 GO:0003677|GO:0046983
Sto12g0991 192 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0991 Sto-Chr12 6169083 6173556 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sto12g0991 SRF-TF 1.9e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1642 3 12426169 12434143 Sto12g0991 12 6169083 6173556 ECH
Sto13g1880 13 26271750 26275448 Sto12g0991 12 6169083 6173556 ECH
Sto12g0991 12 6169083 6173556 Sto12g0991 12 6169083 6173556 ECH