Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0949 ATGGTGAAGATATGTGGGATCGGTGCTGGATACGTAGGGGGTCCAACAATGGCAGTGATAGCTTTGAAATGCCCTGAAATTGAAGTAACCGTAGTGGACATCTCTCACTCTCGCATTGCAGCTTGGAACAGCGATCACCTTCCCATCTACGAGCCTGGTCTAGAGCAAGTGGTTCAACAATGCCGGAACAAGAACCTCTTCTTCAGCACCGATGTGGAAAAGCACGTGGCGGAGGCAGACATAATCTTCGTCTCTGTGAATACTCCAACAAAATCCAGAGGCCTTGGAGCTGGAAAAGCCGCGGATTTGACCTATTGGGAAGGTGCAGCCAGGGTGATCGCTGAAATGTCTAAGTCAAATAAGATTGTTATTGAGAAGTCCACTGTCCCCGTGAGAACAGCTGAGGCTATTGAGAGGATTCTAACCCATAATTCCAATGGTGTTTCCTTTCAGATTCTATCAAACCCGGAATTTCTGTCTGAGGGAACTGCCATTGAAGACCTTCTGAATCCTGATAGGGTTCTTATTGGAGGGAGACAAACCCCTGAGGGTCTCTTGGCCATTCAGACAGTGAAGGACATTTATGCTCATTGGCTGCCTGAAGACAGAATCATAACTACAAATTTGTGGTCAGCTGAGTTAGCTAAGTTGGCTGATAATGCGTTTTTGGCTCAGAGGATTTCATCTATCAATGCTATGTCAGCTCTATGTGAGGCAACTGGAGCAGAAGTTTCAGAGGTGTCTCATGCTTTGAGTAAGAACAGTAAATTAGGGCCCAGGTTTTTGAATGCTAGTGTTGGTTTTGGTGGGTCTTGCTTTCAGAAAGATATACTGAATCTAGTGTATATTTCTGAGAGCAATGGCTTAACTGAAGTTGCAAACTATTGGAAACAAGTGATTCAGATGAATGACTACCAGAAAGATCGGTTTGTGAAAAGGGTTATTTCCTCCATGTTTAATACGGTTTCTGGTAAGAAAATTGCAATACTGGGTTTTGCATTCAAGAAGGACACTAGTGATACAAGGAAGACTCCTTCCATTGATGTTTGCAAGGGTCTTATGGGAGACGATGCTTACTTGACCATTTATGATCCAAGGGTAAGTGAAGACCAGATTCGGAGGGATTTGTCATTGAATAGTACTGTTGAATGGGACCATCCTATTCACCTCCAACCAACGATTAGTCCAAGTACTATGAAACAGGTTAGGATTGTTAAGGATGCTTATGAGGCAACTAAGGATGCTCATGGGATATGCATTCTCACAGAGTGGGACGAATTTAAGAGCCTTGATTACCAGAGAATATTTGATAACATGCAGAAACCTGCGTTTGTTTTTGATGGTAGAAACATATTGAATGTTGGGAGGCTGAGAGAGATTGGATTTATTGTGTACTCAATTGGGAAGCCATTAGACCCCTGGCTGAGGCCATGA 1434 0.4351 MVKICGIGAGYVGGPTMAVIALKCPEIEVTVVDISHSRIAAWNSDHLPIYEPGLEQVVQQCRNKNLFFSTDVEKHVAEADIIFVSVNTPTKSRGLGAGKAADLTYWEGAARVIAEMSKSNKIVIEKSTVPVRTAEAIERILTHNSNGVSFQILSNPEFLSEGTAIEDLLNPDRVLIGGRQTPEGLLAIQTVKDIYAHWLPEDRIITTNLWSAELAKLADNAFLAQRISSINAMSALCEATGAEVSEVSHALSKNSKLGPRFLNASVGFGGSCFQKDILNLVYISESNGLTEVANYWKQVIQMNDYQKDRFVKRVISSMFNTVSGKKIAILGFAFKKDTSDTRKTPSIDVCKGLMGDDAYLTIYDPRVSEDQIRRDLSLNSTVEWDHPIHLQPTISPSTMKQVRIVKDAYEATKDAHGICILTEWDEFKSLDYQRIFDNMQKPAFVFDGRNILNVGRLREIGFIVYSIGKPLDPWLRP 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0949 477 PANTHER UDP-GLUCOSE DEHYDROGENASE/UDP-MANNAC DEHYDROGENASE 1 476 IPR028356 GO:0003979
Sto12g0949 477 Pfam UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3 184 IPR001732 GO:0016616|GO:0051287
Sto12g0949 477 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 210 309 IPR008927 -
Sto12g0949 477 PIRSF UDPglc_GDPman_dh 2 469 IPR017476 GO:0016616
Sto12g0949 477 Pfam UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 328 453 IPR014027 GO:0016616|GO:0051287
Sto12g0949 477 PANTHER UDP-GLUCOSE 6-DEHYDROGENASE 3 1 476 - -
Sto12g0949 477 SMART UDPG_MGDP_dh_C_a_2_a 328 454 IPR014027 GO:0016616|GO:0051287
Sto12g0949 477 TIGRFAM NDP-sugDHase: nucleotide sugar dehydrogenase 3 450 IPR017476 GO:0016616
Sto12g0949 477 Pfam UDP-glucose/GDP-mannose dehydrogenase family, central domain 210 304 IPR014026 GO:0016616|GO:0051287
Sto12g0949 477 SUPERFAMILY UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 315 465 IPR036220 -
Sto12g0949 477 Gene3D - 209 240 - -
Sto12g0949 477 Gene3D - 241 475 - -
Sto12g0949 477 PIRSF UDPglc_DH_euk 1 476 IPR028356 GO:0003979
Sto12g0949 477 Gene3D - 1 208 - -
Sto12g0949 477 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 202 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0949 Sto-Chr12 5892221 5893654 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g1831 13 25687444 25688886 Sto12g0949 12 5892221 5893654 ECH
Sto12g0949 12 5892221 5893654 Sto12g0949 12 5892221 5893654 ECH