Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0910 TTGGAAGAACCATCTCGCGCCTTTTCTATCCTCAAAATGCTGGAAAGTAGAGATCCTGCAATCAAGCTGTTCGGCCAGAAGATTCCCTTCCCCGCCGATGCTGATCTTCCtatcgccgccgccgccgccacgcCGCTGTCCATGGAGGATTCTGCAGCTGGAAACGCCACTGACAAAGAGAAAGAGGCAGATCATCCTCCAAAAACAGAAGAGACTAAGGATTTAGAAACATCAGCAGAGGCTAGTGTGAACCCAAAAACACCTTCCATTGATGAAGAGATTGCAAAATCAAAAAGTGGCAACTCAGAGAAGGAGCAAAGTGATGGAACCAACTCGCAGGAGAAAACCTTGAAGAAGCCAGACAAAATACTTCCATGTCCTCGTTGCAATAGCATGGACACAAAATTCTGTTACTACAACAACTACAACATCAATCAGCCTCGCTACTTCTGCAAAGCCTGCCAGAGATACTGGACTGCAGGTGGTACCATGAGGAATGTTCCAGTAGGAGCAGGACGGCGAAAGAACAAGAATTCTGCCTCCCATTatcgccacatcagcatttCTGAGGCTCTACAAGCAGCTAGAATTGATGCTCCAAATGGGACTCATCTTCCTGGATTGAAGGGCAATGGTAGAGTCCTCAGTTTTGGATTAGATGCACCAATATGTGATTCTATGGCATCAGTTCTGAATCTTGCAGAGAAAAAAGTCCTAAATGGTGCAAGAAATGGGTTTCATAATAGCAAAAGTGTTGATAATGGTGGCGATGACTGCACAAGTGCTGTATCTTCCATTACAGTATCAAACTCCATGGAAGAAAATGGGAAGGGTGTTTCCCAAGAATCACTGCTCAGAAACAATGGATTTTCTCCTCAAATTCCATGTCTTCCTGGAGTTCCTTGGCCTTACCCTTGGAGTACACCAGTTCCTTCACCTCCCTTGTGTCCTCCAGGAATTCCCTTGCCATTCTATCCTGCAGCTTTTTGGAATTGTGCTGTGCCAGGAAATTGGAGTATACCCTGGTTTCCTCCACATTCTCCTGCTCAAACCCCAAAATCTCCGGGCTCGGGTCCTAACTCTCCAACATTAGGGAAGCACTCAAGGGAGGGTGACATGATCAGAGCAGACTATTTGCAGAAAGAAGAACATCCAAAGCAGAGAAATGGATGTGTTTTGGTTCCCAAAACCTTAAGAATTGATGATCCAAGTGAAGCTGCAAAGAGTTCCATATGGGCAACTCTAGGAATCAAGAATGAAACAGCCAGTGGGGGAGGTATGTTTAAGGCCTTCCAATCAAAGAAGGAGCAGAAGAATCATGTGGTTGAAGCCTCCCCAGTGTTGATGGCTAATCCTGCAGCCTTGTCTAGATCTCTAAACTTCCATGAGAACTCCTGA 1398 0.4406 LEEPSRAFSILKMLESRDPAIKLFGQKIPFPADADLPIAAAAATPLSMEDSAAGNATDKEKEADHPPKTEETKDLETSAEASVNPKTPSIDEEIAKSKSGNSEKEQSDGTNSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNINQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNSASHYRHISISEALQAARIDAPNGTHLPGLKGNGRVLSFGLDAPICDSMASVLNLAEKKVLNGARNGFHNSKSVDNGGDDCTSAVSSITVSNSMEENGKGVSQESLLRNNGFSPQIPCLPGVPWPYPWSTPVPSPPLCPPGIPLPFYPAAFWNCAVPGNWSIPWFPPHSPAQTPKSPGSGPNSPTLGKHSREGDMIRADYLQKEEHPKQRNGCVLVPKTLRIDDPSEAAKSSIWATLGIKNETASGGGMFKAFQSKKEQKNHVVEASPVLMANPAALSRSLNFHENS 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0910 465 ProSitePatterns Zinc finger Dof-type signature. 126 162 IPR003851 GO:0003677|GO:0006355
Sto12g0910 465 Pfam Dof domain, zinc finger 121 178 IPR003851 GO:0003677|GO:0006355
Sto12g0910 465 PANTHER CYCLIC DOF FACTOR 2 13 464 IPR045174 GO:0003700|GO:0006355
Sto12g0910 465 ProSiteProfiles Zinc finger Dof-type profile. 124 178 IPR003851 GO:0003677|GO:0006355
Sto12g0910 465 MobiDBLite consensus disorder prediction 54 77 - -
Sto12g0910 465 MobiDBLite consensus disorder prediction 91 122 - -
Sto12g0910 465 MobiDBLite consensus disorder prediction 47 122 - -
Sto12g0910 465 PANTHER CYCLIC DOF FACTOR 1 13 464 - -
Sto12g0910 465 MobiDBLite consensus disorder prediction 345 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0910 Sto-Chr12 5640707 5643275 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0910 13 463 C2C2-Dof Transcription Factor Family AT3G47500 50.951 1.14e-130 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Sto12g0910 zf-Dof 2.4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0910 - - gmx:778113 627.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1560 3 11555816 11556812 Sto12g0910 12 5640707 5643275 ECH
Sto8g2802 8 20315196 20317580 Sto12g0910 12 5640707 5643275 ECH
Sto13g1769 13 25136405 25139584 Sto12g0910 12 5640707 5643275 ECH
Sto11g0936 11 9845216 9847904 Sto12g0910 12 5640707 5643275 ECH
Sto6g3012 6 37228473 37231053 Sto12g0910 12 5640707 5643275 ECH
Sto12g0910 12 5640707 5643275 Sto12g0910 12 5640707 5643275 ECH