Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0789 ATGGAATCATCCGATCACTGGCTTCAGGGCACAATTCATCAGGAGGAATCAGGAGGAGTGGATTCATCTTCACCCTCAGGGGGGGAGATGCTTACATGCTCAAGGCCATTAATAGAGAGGAGGCTAAGACCCCCTCATGACCAAGCCCTAAAGTGCCCAAGGTGTGAGTCCACACACACCAAGTTCTGCTACTACAACAACTACAGCCTGTCTCAGCCAAGGTACTTCTGCAAGACTTGCAGAAGGTACTGGACCAAAGGAGGCACTCTCAGAAACATCCCAGTGGGTGGTGGTTGCAGGAAGAACAAGAAAGTCTCCAACAACAACAAGAAACCCAACGACCCCCccaacaatattaataatattcctcccaaccatcatcatcatcttcaactCTCTTTCCCAGATCATGTTCAGTTTTCTCATCACATCGGTAATCTACTGGGAAAccctaacaataataataataataataacaatgccTTCATGCTGGACAACCCTAGGCCTATTGACTTCATGGAGAGTAAGTTGGAAGGCCTAATTGGGACGACGGCGTCGTCTTCTAGGaactttaataattttatgGGAAATAGTGAGAATAATAATATGGGTATGGTGGGAATTAATGGGACGATTGGAGACATAAGTAGTAGCAGTGGTGGTGGTTACATTATGAATGGGTTGTTGCCGCCAAATTTCCATCATCATCACGGCGGCAGTAGTGGTAGTGGGACTTACAGTATAATGGAGTCTTGTCAGAGACTGATGCTGCCATATTATGATGAGGACCAAAATGCCACCACaattgataatgatgatgatgatgatgtgaagCCAAACCCTAAGCTTTTGTCTCTTGAATGGCAGGAGCAAGGACAGGGACAGGGTAGTTGTTCTGATGTTGGAAAAGACTCATTTGGGTATCTCAATGCTCTAGGATCATGGACCGGCATCATCAACGGCTATGGTTGTTCCTCTACTACAAACCCTTTGGTCTAA 999 0.4124 MESSDHWLQGTIHQEESGGVDSSSPSGGEMLTCSRPLIERRLRPPHDQALKCPRCESTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVSNNNKKPNDPPNNINNIPPNHHHHLQLSFPDHVQFSHHIGNLLGNPNNNNNNNNNAFMLDNPRPIDFMESKLEGLIGTTASSSRNFNNFMGNSENNNMGMVGINGTIGDISSSSGGGYIMNGLLPPNFHHHHGGSSGSGTYSIMESCQRLMLPYYDEDQNATTIDNDDDDDVKPNPKLLSLEWQEQGQGQGSCSDVGKDSFGYLNALGSWTGIINGYGCSSTTNPLV 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0789 332 MobiDBLite consensus disorder prediction 95 130 - -
Sto12g0789 332 ProSiteProfiles Zinc finger Dof-type profile. 50 104 IPR003851 GO:0003677|GO:0006355
Sto12g0789 332 MobiDBLite consensus disorder prediction 1 30 - -
Sto12g0789 332 MobiDBLite consensus disorder prediction 109 127 - -
Sto12g0789 332 MobiDBLite consensus disorder prediction 1 31 - -
Sto12g0789 332 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 15 322 IPR045174 GO:0003700|GO:0006355
Sto12g0789 332 ProSitePatterns Zinc finger Dof-type signature. 52 88 IPR003851 GO:0003677|GO:0006355
Sto12g0789 332 Pfam Dof domain, zinc finger 47 104 IPR003851 GO:0003677|GO:0006355
Sto12g0789 332 PANTHER DOF ZINC FINGER PROTEIN DOF5.6-LIKE 15 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0789 Sto-Chr12 4948477 4949757 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0789 7 332 C2C2-Dof Transcription Factor Family AT5G62940 38.325 7.06e-47 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Sto12g0789 zf-Dof 2.2e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0789 - - gmx:100806697 326.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1417 3 10352055 10353453 Sto12g0789 12 4948477 4949757 PCT