Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1230 ATGTCACCGGAAAATAATTCTCCTTCCAAGTCGTCGGCAACCAAAGACGACGGCAGCCAGGGCTCTGGCGGCCGGAAAGGCGGTTCGGCGAGGCCACCAGAACAAGGCCTCAAGTGTCCTCGATGTGATTCGCCCAACACCAAATTCTGCTACTACAACAATTACAGCCTGACGCAGCCAAGGCACTTCTGCAAGACCTGCCGGAGGTACTGGACAAAAGGCGGAGCTCTGCGCAACGTCCCCATCGGAGGCGGCTGCCGGAAGAACAAGAAGGTGAAGGCCTCCACGTCGTCGAGGGTGCCGGGCGAGTCGACGGAGGTGGGCGGGTTCAAGTTCTTCCAGAGCGGCGTCTCCATGGATTTTCATAATCTGGGGGCGTCATTACCTTTCCCTGCTCCTAGACTCCACCACTCATCCATGTACAACCAAATGTCTTGTTCGTTTGAAAACGTGCAAGGTGCAGGGAGTTTTGATCCCTCAAATTGCATgattaatttcaataattacGGAGGAGGAGCAGGTTTTAGTGGCGTAATTCAAGGCATGAGCTCCATGAACGTGAATAGCAGCCTGGCTTCTTCAATTGAATCACTGAGTTGTGTGAACCAGGACTTGCACTGGAAGCTACAGCAACAACGCTTAGCCATGCTGTTTGGTGGCGACGATGATAGTCCGAAAGCAATTGAAGACGGCGTTGGTGTCAATAATCTTGAGATTTCCAAGGCAGAGAATTGTGGAGTGGGAGGGAGTTCCACAAGCCAAGATGTTGCTGCGCCTACAGAGTGGTTCTTCGGGGCCTCCGCCGTCACTCCTACGCCCACCACTGGCAGTGGGGGCCATACTAATACTGCCGTCCATGCTTGGCCTGATGTGCACCACCACTATAATGCTTTGCCCTAG 900 0.53 MSPENNSPSKSSATKDDGSQGSGGRKGGSARPPEQGLKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKKVKASTSSRVPGESTEVGGFKFFQSGVSMDFHNLGASLPFPAPRLHHSSMYNQMSCSFENVQGAGSFDPSNCMINFNNYGGGAGFSGVIQGMSSMNVNSSLASSIESLSCVNQDLHWKLQQQRLAMLFGGDDDSPKAIEDGVGVNNLEISKAENCGVGGSSTSQDVAAPTEWFFGASAVTPTPTTGSGGHTNTAVHAWPDVHHHYNALP 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1230 299 MobiDBLite consensus disorder prediction 1 19 - -
Sto11g1230 299 Pfam Dof domain, zinc finger 35 91 IPR003851 GO:0003677|GO:0006355
Sto11g1230 299 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN-RELATED 5 299 - -
Sto11g1230 299 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 5 299 IPR045174 GO:0003700|GO:0006355
Sto11g1230 299 ProSitePatterns Zinc finger Dof-type signature. 39 75 IPR003851 GO:0003677|GO:0006355
Sto11g1230 299 ProSiteProfiles Zinc finger Dof-type profile. 37 91 IPR003851 GO:0003677|GO:0006355
Sto11g1230 299 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1230 Sto-Chr11 12157244 12158143 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g1230 1 299 C2C2-Dof Transcription Factor Family AT5G65590 42.296 1.90e-61 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Sto11g1230 zf-Dof 1.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1230 - - gmx:100780729 291.967