Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g0936 ATGTCGGAGGTTAAAGAGGCGGAGATAAAGCTATTTGGGAGGACGATTTCTCTTCCACACaatcgccaccaccaccactctcatcatcatcatcatagtcCTCCTTCGTCTTCGTCTTCTCCGCCTGAAGTCAGCTCTGCGATACACCACCACCAATCTCAACGCCTCAAGGAACTGTCAAGTAAAGAACTCACCTCAGCACAAGATGATGATGCCTCGTATGAAAGCACAGAGGATTTAAAATCTCCAACAGCATCTTCAGGTGTTTTTGAGAATCCTAAGACTCCCTCAGCAGAAAGAGAGACTTCTTTACTCAAATCTTCTAAGCATGGAGAACAAAGTGAGACAAgcaatttagaagaaaaaactCCTAAAAAACCTGATAAGATACTTCCATGTCCGCGCTGCAATAGCATGGACACTAAATTttgttactataataattacaatGTCAATCAGCCCCGTCATTTCTGCAAGAACTGTCAGAGATATTGGACCGCCGGAGGAACTATGAGAAATGTGCCTGTAGGTGCTGGTCGTCGCAAGAACAAAAACTCTTCTGCCTCACAGTATCGTCACATAATGGTTCCAAAGGCCCTTCAAATTGCCACAGACAATTCTGCCAATGGATTTCATAACCCTGTCTTGGGAAATAGACCAGCTGTCTTGACCTTTGGTTCAGATTCTCCTCTTTGTGATTCCATGGCTTCTGTATTGAACCTTGCAGAGAAAACACAGAATGGTGTTTTGAACGGGTTTCATTTAGCTGAGCAGAATACTTTTGTTTCTTATGTACGGGAAAATTGTGGGAACGATCACCCCATAGGAGCTTCTGTTACAACTAAAACTTCATCAGAGAATAAAGGCAACACTTCCTTGCAAGAACCAGTGGATAAAATTAATCCAGCTTTCCCTCCTCAACCTTCATGCTTCCCAGGTTCCTCCTGGCCTAATCCATGGAACACAGCACAGTGGATTTCACCAGTGCCTTCTCCTGCATTCTGCCCACGAGGCTATCCAGTATCATTTTATCCTAATCCTACTTATTGGGGTTGCACTTTTCCAGGTTCCTGGAATATACCTTCCATCTCTGCCCAATCTTCAGTTAACCACTCTGCCCCTAATTCACCTACTCTGGGAAAACACTCAAGGGAAGGGAACATCCTCAGTCCAACCAACTCACCAAAAGGAAAGCCTGATACAGAGAATAACAGTTCAGAAAATGGTGTCTTGATCCCCAAAACACTGAGAATTGATGATCCCAGCGAAGCTGCAAAAAGTTCCATATGGTCAGCACTAGGGATAAAGAATGAGAAGGGAAATTCTATCAGTGGAGGAGGCCTTTTCAAGGCCTTTCCAGCTAAGGGAGATGACAAGAATTACGCGGTTGAACCATCGCTGGTGTTGCAAGCCAACCCGGCAGCTTTATCACGATCTCTTACTTTCCATGAACAGACATAA 1461 0.4223 MSEVKEAEIKLFGRTISLPHNRHHHHSHHHHHSPPSSSSSPPEVSSAIHHHQSQRLKELSSKELTSAQDDDASYESTEDLKSPTASSGVFENPKTPSAERETSLLKSSKHGEQSETSNLEEKTPKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSSASQYRHIMVPKALQIATDNSANGFHNPVLGNRPAVLTFGSDSPLCDSMASVLNLAEKTQNGVLNGFHLAEQNTFVSYVRENCGNDHPIGASVTTKTSSENKGNTSLQEPVDKINPAFPPQPSCFPGSSWPNPWNTAQWISPVPSPAFCPRGYPVSFYPNPTYWGCTFPGSWNIPSISAQSSVNHSAPNSPTLGKHSREGNILSPTNSPKGKPDTENNSSENGVLIPKTLRIDDPSEAAKSSIWSALGIKNEKGNSISGGGLFKAFPAKGDDKNYAVEPSLVLQANPAALSRSLTFHEQT 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g0936 486 Pfam Dof domain, zinc finger 128 185 IPR003851 GO:0003677|GO:0006355
Sto11g0936 486 MobiDBLite consensus disorder prediction 34 49 - -
Sto11g0936 486 MobiDBLite consensus disorder prediction 50 77 - -
Sto11g0936 486 MobiDBLite consensus disorder prediction 276 298 - -
Sto11g0936 486 MobiDBLite consensus disorder prediction 365 413 - -
Sto11g0936 486 MobiDBLite consensus disorder prediction 103 129 - -
Sto11g0936 486 MobiDBLite consensus disorder prediction 19 129 - -
Sto11g0936 486 MobiDBLite consensus disorder prediction 365 411 - -
Sto11g0936 486 MobiDBLite consensus disorder prediction 19 33 - -
Sto11g0936 486 ProSiteProfiles Zinc finger Dof-type profile. 131 185 IPR003851 GO:0003677|GO:0006355
Sto11g0936 486 MobiDBLite consensus disorder prediction 78 102 - -
Sto11g0936 486 PANTHER CYCLIC DOF FACTOR 2 1 486 IPR045174 GO:0003700|GO:0006355
Sto11g0936 486 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 1 486 - -
Sto11g0936 486 MobiDBLite consensus disorder prediction 276 297 - -
Sto11g0936 486 ProSitePatterns Zinc finger Dof-type signature. 133 169 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g0936 Sto-Chr11 9845216 9847904 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g0936 84 484 C2C2-Dof Transcription Factor Family AT5G39660 43.478 8.60e-86 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Sto11g0936 zf-Dof 3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g0936 - - zju:107429011 578.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto11g0936 11 9845216 9847904 Sto11g0936 11 9845216 9847904 ECH
Sto11g0936 11 9845216 9847904 Sto3g1560 3 11555816 11556812 ECH
Sto11g0936 11 9845216 9847904 Sto12g0910 12 5640707 5643275 ECH
Sto11g0936 11 9845216 9847904 Sto8g2802 8 20315196 20317580 ECH
Sto11g0936 11 9845216 9847904 Sto13g1769 13 25136405 25139584 ECH