Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g0879 CTGTTCAAAAAGCAAGAAGCTTCCTCTTCTCTTGGTTTCTCTGTTTCTCAACTCGATCTACAATTTTTGGTCATCATCCACAATGGAACATATTGTGAGAGCTTGCAGATTCGATCCTTCCAGCTAGATTCATCAATGGAGGAAGAGAGGAAGTTCGTGTGCAAGTATTGCAACAAGAAGTTCCCATGTGGGAAGTCTCTTGGTGGACACATCAGGACCCACATGACTACTTCTTCACATTCACCATCTCCTCAAGTTAAAATCAGAAGAACCAattataataatgatgatgatgatgatggtaatgGTATTGTGAATGGTGGAAGAAAGAGGAAGAGGGATTTGGTTTCTGAAGAAGATTCTGGAAACCCCATTTATGGGCTGAGAGAGAACCCCAAGAAGACAACGAGGTTCGTGCattccaataataataataataataataattcatccTCACAGCAAGAGAGAATCTGCAAAGAATGTGGGAAAAGCTTTTCGTCTCTCAAAGCTCTCTGTGGCCACATGGCTTGTCATTCTGAGAAAGACAAACCCCAGAAATTGTTGGTGATGGATGATAGTGAAGAATCCGATACTGAGACATATTATTCTGGTCAGAATCATCATAATCATAGGAGATCCAAGAGAATGAGGTTCAAGGCTTCACTTGATAGCAATAGTAGTAATAccaatactaataataattcgTCTGTTTCTGAGGTAGAGCAGGAGCAAGAAGAGCTCGCTAGGTGTTTGATGTTATTATCCAAAGACACTAACTATAAAGGTCCTAACTTTGTTTTCCCCACCGAGTCTTCTGATAACAATTCTGTGGTTCTCGAGGCTAAATCACCATCTGTCAGCACCAGGATTGTGGAGGAAGACAAGAACAAGAAGAATAAGAGCAAGGATGTTTGTTCTGAGAATTCAGGTTCTGGGTATCTCAAGAAGTTGGATTCAGCTGGGCTTCAGGAATTCAAGACGCCAAAAGTGGAACAAGTCAGGTCTTGTGATCCGTATGATGCAGAatcgaggaagaagaagaagatgacggTGATGCTGAAGAACAACAGAGGAAAAACCAGAGGCAGTACTGAACCCAGAAGACTTTTCTTGGATGAttcaagaaagagagaagaaaactaCGATTCTCTGAGCCAAAACAACATCCCAACTGGTGGGGTTTCTTGGAAGAACAAaaacaagaacaagaagaagacaCCAAATGCAAACGATTCTTCAGCATACGagagtgatgatgatgatgatgatgatgatgagagtaGCACAGACACTGATTCTTATCCTGCTTCTCCTCCAAAACCTCATAGTAGCAGCAGCAGCAAGTCCAAGAAGAAATTGAAGtcaaagaaaagtaaagagcaTGAATGTCCAATATGCTACAAAACTTTCAGTTCAGGCCAAGCATTAGGAGGTCATAAAAGGTCCCATTTTGTGGGAGGTTCTGAGGAAAACAACACAGTGATCATCAAGCAAgattctcctcctcctcctcctcctcctcctgttGTTCAATGCCTCATTGATCTCAATCTTCCTGCTCCTCAAgatgattaa 1575 0.3581 LFKKQEASSSLGFSVSQLDLQFLVIIHNGTYCESLQIRSFQLDSSMEEERKFVCKYCNKKFPCGKSLGGHIRTHMTTSSHSPSPQVKIRRTNYNNDDDDDGNGIVNGGRKRKRDLVSEEDSGNPIYGLRENPKKTTRFVHSNNNNNNNNSSSQQERICKECGKSFSSLKALCGHMACHSEKDKPQKLLVMDDSEESDTETYYSGQNHHNHRRSKRMRFKASLDSNSSNTNTNNNSSVSEVEQEQEELARCLMLLSKDTNYKGPNFVFPTESSDNNSVVLEAKSPSVSTRIVEEDKNKKNKSKDVCSENSGSGYLKKLDSAGLQEFKTPKVEQVRSCDPYDAESRKKKKMTVMLKNNRGKTRGSTEPRRLFLDDSRKREENYDSLSQNNIPTGGVSWKNKNKNKKKTPNANDSSAYESDDDDDDDDESSTDTDSYPASPPKPHSSSSSKSKKKLKSKKSKEHECPICYKTFSSGQALGGHKRSHFVGGSEENNTVIIKQDSPPPPPPPPVVQCLIDLNLPAPQDD 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g0879 524 MobiDBLite consensus disorder prediction 283 310 - -
Sto11g0879 524 ProSitePatterns Zinc finger C2H2 type domain signature. 463 483 IPR013087 -
Sto11g0879 524 MobiDBLite consensus disorder prediction 414 430 - -
Sto11g0879 524 MobiDBLite consensus disorder prediction 383 397 - -
Sto11g0879 524 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 46 524 - -
Sto11g0879 524 ProSitePatterns Zinc finger C2H2 type domain signature. 158 178 IPR013087 -
Sto11g0879 524 MobiDBLite consensus disorder prediction 360 382 - -
Sto11g0879 524 MobiDBLite consensus disorder prediction 91 119 - -
Sto11g0879 524 SMART c2h2final6 156 178 IPR013087 -
Sto11g0879 524 SMART c2h2final6 52 74 IPR013087 -
Sto11g0879 524 SMART c2h2final6 461 483 IPR013087 -
Sto11g0879 524 MobiDBLite consensus disorder prediction 71 90 - -
Sto11g0879 524 ProSiteProfiles Zinc finger C2H2 type domain profile. 52 79 IPR013087 -
Sto11g0879 524 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 46 524 - -
Sto11g0879 524 MobiDBLite consensus disorder prediction 220 241 - -
Sto11g0879 524 MobiDBLite consensus disorder prediction 137 153 - -
Sto11g0879 524 MobiDBLite consensus disorder prediction 287 304 - -
Sto11g0879 524 ProSitePatterns Zinc finger C2H2 type domain signature. 54 74 IPR013087 -
Sto11g0879 524 ProSiteProfiles Zinc finger C2H2 type domain profile. 461 483 IPR013087 -
Sto11g0879 524 MobiDBLite consensus disorder prediction 336 508 - -
Sto11g0879 524 MobiDBLite consensus disorder prediction 191 242 - -
Sto11g0879 524 Gene3D Classic Zinc Finger 34 102 - -
Sto11g0879 524 SUPERFAMILY beta-beta-alpha zinc fingers 48 77 IPR036236 -
Sto11g0879 524 Pfam C2H2-type zinc finger 461 483 - -
Sto11g0879 524 Pfam C2H2-type zinc finger 157 180 - -
Sto11g0879 524 Pfam C2H2-type zinc finger 52 75 - -
Sto11g0879 524 MobiDBLite consensus disorder prediction 69 153 - -
Sto11g0879 524 SUPERFAMILY beta-beta-alpha zinc fingers 157 483 IPR036236 -
Sto11g0879 524 ProSiteProfiles Zinc finger C2H2 type domain profile. 156 183 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g0879 Sto-Chr11 9439240 9440890 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sto11g0879 zf-C2H2_6 5.1e-08 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto11g0879 11 9439240 9440890 Sto11g0879 11 9439240 9440890 ECH