Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g0844 atgggAAGAGGTAGGGTTCAGCTAAAGAGGATAGAAAACAAGATCAATCGGCAGGTGACTTTCTCGAAAAGAAGAAATGGTTTGTTCAAGAAAGCCCATGAGATCTCTGTCCTCTGTGATGCTGAGGTTGCTTTGATTGTCTTCTCCCACAAAGGAAAGCTCTTTGAGTATGCCACAGATTCttgCATGGAGAAAATACTGGAACGCCATGAAAGGTATGCTTATGCAGAGAGGCAGCTTACAGGAGGAAATGATTCTGGTTCACAGGAAAACTGGACCATTGAGTATACTAGACTTAAAGCTAAGATTGAGCTTTTGCAGAGAAACCATAGGTACACATATGTTACTGCACTATATGGGAGAAGATTTGGGTACGTTGAGCCTGAAAGAGCTTCAAAGTCTGGAGCAACAGAGAAGGTGATGCAGGAGCAGAACAGCATGCTGGCAAAGAAGataaaagagAAGGAGAAGGCTGCTGCTGCTGCAGCACAAGCACAGGCACAGCATGTAACATGGGAGCATCCAAACCTTGGAGGAGCCAATACATCTTTCTTACTCCCACATTCACTTCCCACTCTAAACATGGGTGGCAATTATGGAGAGGAAGCAGCAGAAGGAGGGAGGAACGATCTTGACCTAACCCTCGAACCACTATATTCCTGCCACCTTGGGTATGAGCTTGGAAGGCAACCTGCTAACACAAAATTATCCAGCAACAAGACAGTTAGGAGGATTAGGGTTCGAGGTGGAAATGTCAAGTGGCGTGCATTGAGGCTTGATACAGGAAATTACTCCTGGGGAAGTGAAGCCGTGACTCGCAAAACAAGAATCCTTGATGTGGTTTACAATGCTTCTAATAATGAACTGGTCCGAACTCAGACATTGGTCAAAAGTGCTATTGTTCAGGTTGATGCTGCACCTTTCAAGCAGTGGTATCTCCAACATTATGGTGTTGACATTGGTCGCAAGAAGAAGACTGCAACTTCTGCCAAGAAGGAGGGTGAGGAAGTTGAAGCCGTAACAGAGGAAGTAAAAAAGAGCAAGCATGTTTTGAGGAAGTTGGAGAAGCGCCAAGAGAATCGTACACTTGATCCACATATTGAAGAACAGTTTGGAGGTGGTCGTCTTTTGGCTTGCATCTCATCCCGACCTGGTCAATGTGGTCGTGCCGATGGGTACATATTGGAGGGTAAAGAGCTGGAATTTTATATGAAGAAGCTTCAAAGGAAAAAGGGCAAGGGTGCTGCCTAA 1251 0.4476 MGRGRVQLKRIENKINRQVTFSKRRNGLFKKAHEISVLCDAEVALIVFSHKGKLFEYATDSCMEKILERHERYAYAERQLTGGNDSGSQENWTIEYTRLKAKIELLQRNHRYTYVTALYGRRFGYVEPERASKSGATEKVMQEQNSMLAKKIKEKEKAAAAAAQAQAQHVTWEHPNLGGANTSFLLPHSLPTLNMGGNYGEEAAEGGRNDLDLTLEPLYSCHLGYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKTATSAKKEGEEVEAVTEEVKKSKHVLRKLEKRQENRTLDPHIEEQFGGGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAA 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g0844 416 Coils Coil 89 109 - -
Sto11g0844 416 TIGRFAM eS8: ribosomal protein eS8 225 397 IPR001047 GO:0003735|GO:0005840|GO:0006412
Sto11g0844 416 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Sto11g0844 416 Gene3D Ribosomal protein S8e, subdomain 306 374 IPR042563 -
Sto11g0844 416 Gene3D - 226 411 - -
Sto11g0844 416 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Sto11g0844 416 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Sto11g0844 416 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Sto11g0844 416 PANTHER 40S RIBOSOMAL PROTEIN S8 224 416 IPR001047 GO:0003735|GO:0005840|GO:0006412
Sto11g0844 416 CDD Ribosomal_S8e_like 225 395 - -
Sto11g0844 416 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Sto11g0844 416 PANTHER 40S RIBOSOMAL PROTEIN S8 224 416 - -
Sto11g0844 416 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Sto11g0844 416 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Sto11g0844 416 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Sto11g0844 416 Coils Coil 337 357 - -
Sto11g0844 416 Coils Coil 148 168 - -
Sto11g0844 416 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Sto11g0844 416 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Sto11g0844 416 Pfam Ribosomal protein S8e 145 395 IPR022309 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g0844 Sto-Chr11 9154020 9166696 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sto11g0844 Ribosomal_S8e 1.2e-43 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto11g0844 11 9154020 9166696 Sto11g0844 11 9154020 9166696 ECH
Sto11g0844 11 9154020 9166696 Sto13g1882 13 26282438 26289605 ECH