Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g0748 ATGCTGGTTCGGAGGAGGGTGATGAGCTGGAGAAGTGTGGGCAAGTCTCTGCAAGCTCTTGTAGCTCATGGATTACTCTTCTCATTCACTCTCCTGCTTGTTCTCAAGCTTGACCATGTTGTTTCTTACTCGTGGTGGATCATGTTTTCACCTATTTGGCTTTTTCATGCGGTTGTAGCACGAGGGCGGTTTTCCTTGCCTGCTCCTTCAATGCCCCATGATCGCCATTGGGCTCCTTGTCATGCCATCATGGCAACACCATTACTTGTTGCTTTTGAGCTACTTCTTTGTATACATCTTGAGAGCCCTTATGTGGTAAATTTAAAGATAGTATTCTTACCCCTGTTGGCTTTGGAAGTGGCAATTTTGATTGATAACATAAGGATGTGCACGACTTTGCTGCCAGTAGATGATGATTCTATGAGTGATGAAGCAATATGGGAAACCCTTCCTTACTTCTGGGTTGCAATATCCATGGTCTTCTTAATTGCTGCTACAGTTTTTACTCTTCTTAAGATATGCGGTGATGTGGATGCTCTAGGCTGGTGGGACCTATTTATTAACTACAGCATTGCAGAGGGCTTTGCCTTTCTTGTTGGTACAAAGTGGTACAATCCAACAATTCATGGGAATTGTCAGATTACAGAATCATCACCATTAACTGTAAGATACCTGGACTGCTGTAGCAGAGTAGTTATTTCCTCTGATGAAGATAGACAGCAAAGTGGATTATGCAATCCGCAGGACATTGGTGGGCATATTATGAAGATTCCATTCATTGTTTTCCAGATACTGCTAGTTATGCATTTAGAGgGTACACTTTTTAGTGCCAGAAGTATACCATTTTGGGTTGTCTTCTCTCCCCTTTTTCTGATGCAAGGAGCTGGGATTTTATTTGCATTATATAGATTGGTGGAAAAACTAGTCCTTTTACTTCAAAGTGGAGAAATTCCTGCAAGATACTCAGCTGTAGCATCAATAGCCCATGATTACTTTGGGTTCTTACATCATGGGTCAAGGTTGCTGGGTTGGTGGTCCATAGATGAAACAAGTAGAGAGGAACAAGCTAGAATTTATGGTGGTGAGACTTCTGGCTGTGAATCATTTCTCCCCTCCTCTCCCCACAAGCAAAAGAAAATGGCAAAACCTTCTAAGTATAATACTTTCTCCCCTGATACGGTGAAGAAAATGCCTAGAGCAGATCTTATTGAGGAGATTTGGAGACTACAAGCTGCACTGAATGAACAGACAGACGTTAGAAAATTTAGCCAGCAGGAGTATGAAAGacttcaaaatGAAAAGATCCTATGCAGAGTCTGCTTTGAAGAGCAGGTAAATGTACTTCTGCTTCCTTGCAGGCATTACATTCTTTGCAGAACATCATGGTTGGTGGACAAAAGTAGAATAGCAACCAAAATAAAGAGTGCTTCCGGAGCATGTGATCCCGAAAAGGTTACATGGAAAAGCAATCCGACCAGAGCTTGCCCAAGTTGTCAATATGTTATTGACAATAGCGATGTAGCACAAGAGTGGCCAGGATTGCCGAAAGGCGTGAAATTTGATCCGTCTGATCAAGACATTATGTGTCACTTGCTCGCGAAAGCTGGTGCGGGAAAATCAAAACCCCATCCATTCATTGATGAATTTATCACTACTCTTGAAGTGGACGACGGAATTTGTTATACTCATCCGAAACATTTGCCAGATGGAAGTGCTTGCCACTTTTTCCATAGAGCAGTCAAGGCTTATAATACTGGCACTCGAAAGCGTCGAAAAATACACGGTCAGGATTTCGGTGATGTCCGTTGGCACAAGACCGGAAGGACTAAACCGGTCGTGGTTGATGGTGTTCAAATAGGGTGTAAAAAGATTATGGTTCTGTATATGAGCATGGTTAGAGGAGGAAAAGCTGAGAAAACTAATTGGGTTATGCATCAATATCACCTAGGAACCCAAGAGGATGAAAACCACGGCGAGTATGTCGTCTCTAAAGTATTTTACCAGCAGCCACAAGTCAAATTGGGCGATAAAGATGACATCGATATTCCTGAAGTCGCCGAAACTGTTGAGGAAACAAACGTGCAAGTTGATCCAGTTGCTCCCAAATCGGCGACTCCTGATCCTCCTTTTAATGAGCGGCGACATCCAAATGTTGACCTTGGACAAGAATCGTATCTTGTTCCTCAGCCTCCTGCAATGGAATGTGTAGAAGAAGCAATTCAAGCTGATTGTGAAGAACCAAAAGCTGATCTACCCGAGGAAGAAACTCAAAATAATAACGAAGGGATGGATGATAACGAAAACTGTGATGACGAAGAACCAAAATGGTGGGATAGTGAATCGCAGAATCTGTTGAATTCACAGCAACTTGTTGAAGCATTGTCCTTGTGTGACGACCTCCTTCGAAGCCAATCTCCCAATAGAGACGAAGAAAATGGAGAAAAGAAGGACCAGCCTAGTTTTTCGGTGTATGCTCAGCTTGGACCGGAGCATCTAAAGAAGGATCTTGAAGAGTGCCAAAATCTTGCCATTGATAATATTGAACTCGATACGCCTCCAGAGTTCCGACTAAGTCAGCTGGAATTTGGGTCACAGGACAGCTTCATCTCCTTTGGTGGAAAAGCAGTTAACTGA 2634 0.4275 MLVRRRVMSWRSVGKSLQALVAHGLLFSFTLLLVLKLDHVVSYSWWIMFSPIWLFHAVVARGRFSLPAPSMPHDRHWAPCHAIMATPLLVAFELLLCIHLESPYVVNLKIVFLPLLALEVAILIDNIRMCTTLLPVDDDSMSDEAIWETLPYFWVAISMVFLIAATVFTLLKICGDVDALGWWDLFINYSIAEGFAFLVGTKWYNPTIHGNCQITESSPLTVRYLDCCSRVVISSDEDRQQSGLCNPQDIGGHIMKIPFIVFQILLVMHLEGTLFSARSIPFWVVFSPLFLMQGAGILFALYRLVEKLVLLLQSGEIPARYSAVASIAHDYFGFLHHGSRLLGWWSIDETSREEQARIYGGETSGCESFLPSSPHKQKKMAKPSKYNTFSPDTVKKMPRADLIEEIWRLQAALNEQTDVRKFSQQEYERLQNEKILCRVCFEEQVNVLLLPCRHYILCRTSWLVDKSRIATKIKSASGACDPEKVTWKSNPTRACPSCQYVIDNSDVAQEWPGLPKGVKFDPSDQDIMCHLLAKAGAGKSKPHPFIDEFITTLEVDDGICYTHPKHLPDGSACHFFHRAVKAYNTGTRKRRKIHGQDFGDVRWHKTGRTKPVVVDGVQIGCKKIMVLYMSMVRGGKAEKTNWVMHQYHLGTQEDENHGEYVVSKVFYQQPQVKLGDKDDIDIPEVAETVEETNVQVDPVAPKSATPDPPFNERRHPNVDLGQESYLVPQPPAMECVEEAIQADCEEPKADLPEEETQNNNEGMDDNENCDDEEPKWWDSESQNLLNSQQLVEALSLCDDLLRSQSPNRDEENGEKKDQPSFSVYAQLGPEHLKKDLEECQNLAIDNIELDTPPEFRLSQLEFGSQDSFISFGGKAVN 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g0748 877 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 412 507 IPR013083 -
Sto11g0748 877 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 3 382 - -
Sto11g0748 877 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 383 500 - -
Sto11g0748 877 Coils Coil 413 433 - -
Sto11g0748 877 Gene3D NAC domain 523 672 IPR036093 GO:0003677|GO:0006355
Sto11g0748 877 SUPERFAMILY NAC domain 499 668 IPR036093 GO:0003677|GO:0006355
Sto11g0748 877 MobiDBLite consensus disorder prediction 691 717 - -
Sto11g0748 877 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 3 382 - -
Sto11g0748 877 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 383 500 - -
Sto11g0748 877 Pfam No apical meristem (NAM) protein 515 649 IPR003441 GO:0003677|GO:0006355
Sto11g0748 877 Pfam Transmembrane Fragile-X-F protein 35 291 IPR019396 -
Sto11g0748 877 MobiDBLite consensus disorder prediction 750 775 - -
Sto11g0748 877 MobiDBLite consensus disorder prediction 757 774 - -
Sto11g0748 877 ProSiteProfiles NAC domain profile. 514 668 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g0748 Sto-Chr11 8418042 8429828 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g0748 10 460 C3H Transcription Factor Family AT1G73950 60.131 0.0 534
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sto11g0748 Tmemb_185A 6.6e-84 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto11g0748 11 8418042 8429828 Sto11g0748 11 8418042 8429828 ECH