Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g0743 ATGGATGTAAGCACTGATAATGAAAGCACCACAAGTACCGACTCGGTGGTCTCAATATCCCTTTCTCCGGCGGCCACTACTCCGTCGCCGTTTACCTTGACGCCGGCGAAGTCGTCGCCGCCGCCTCCAAATAGTCTTTGCCGTGTCGGAAGCGGCGCCAGTACCGTCTTGGACTCCGAGAACGGCGTGGAGGCGGAGTCACGGAAACTCCCGTCGTCCAAGTACAAGGGAGTGGTGCCCCAACCCAATGGACGTTGGGGAGCTCAGATTTACGAGAAGCACCAGCGCGTCTGGCTCGGCACTTTCAACGAGGAAGACGAAGCCGCGAGGGCGTACGACATCGCCGCCCAGAGGTTTCGCGGCAAGGACGCCATCACAAACTTCAAGGCCACcgccggcggcggcggcgaAGACGACGACGACGTCGAGACGGCGTTCTTGAACTCGCATTCCAAGGCGGAGATCGTGGACATGCTGAGGAAGCACACGTACAATGATGAACTGGAGCAGAGCAAGCGGAACCACGGCTTCGGCGGAGAGAATTACAGAAAATCGCTGAAGGAAGGCGGGGCAGGCGCGTGCTTCGCAAGGGTCCAGAAAGCGCGTGAACAGCTCTTCGAAAAAACAGTTACGCCGAGCGACGTGGGAAAGCTGAACCGATTGGTTATACCGAAGCAGCACGCGGAAAAGCACTTCCCGTTGCAGAGCGGAACCGCCACGACGACGgcgacggcggcggcggcgaaGGGCGTGCTCTTGAATTTCGAAGACATTGGAGGGAAAGTATGGAGGTTTCGGTACTCGTATTGGAATAGTAGCCAGAGCTACGTGCTAACCAAAGGGTGGAGCCGGTTCGTGAAGGAGAAGAACCTGAAAGCCGGGGATACGGTCAGCTTCCACAGATccaccggaccggaccggcagCTCTACATTGACTGGAAAACCCGGAATAACCAGACGGGCGAGAGCGGCGGTGATGGGGTTGGAGTATTGTACAACCCGGCCGGACCGGTGGTGGAGCCGGTTCAGATGGTTCGGCTATTTGGGGTGAACATCTTGAAAATACCTGGTTCTGATGCTAACAATATAGGTGGATGCAGCCATgggaagagaaaagaaatgGAGCTGTTTACGTTAGAGTGTAGCATTAACAAGAAGGCAAAGATAATTGGAGCTTTGTaa 1182 0.5169 MDVSTDNESTTSTDSVVSISLSPAATTPSPFTLTPAKSSPPPPNSLCRVGSGASTVLDSENGVEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDIAAQRFRGKDAITNFKATAGGGGEDDDDVETAFLNSHSKAEIVDMLRKHTYNDELEQSKRNHGFGGENYRKSLKEGGAGACFARVQKAREQLFEKTVTPSDVGKLNRLVIPKQHAEKHFPLQSGTATTTATAAAAKGVLLNFEDIGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDTVSFHRSTGPDRQLYIDWKTRNNQTGESGGDGVGVLYNPAGPVVEPVQMVRLFGVNILKIPGSDANNIGGCSHGKRKEMELFTLECSINKKAKIIGAL 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g0743 393 SMART B3_2 206 317 IPR003340 GO:0003677
Sto11g0743 393 Gene3D AP2/ERF domain 73 130 IPR036955 GO:0003700|GO:0006355
Sto11g0743 393 SUPERFAMILY DNA-binding domain 73 130 IPR016177 GO:0003677
Sto11g0743 393 ProSiteProfiles B3 DNA-binding domain profile. 206 317 IPR003340 GO:0003677
Sto11g0743 393 MobiDBLite consensus disorder prediction 1 33 - -
Sto11g0743 393 SMART rav1_2 74 135 IPR001471 GO:0003700|GO:0006355
Sto11g0743 393 CDD AP2 73 131 IPR001471 GO:0003700|GO:0006355
Sto11g0743 393 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 1 393 IPR044800 GO:0003700
Sto11g0743 393 SUPERFAMILY DNA-binding pseudobarrel domain 204 315 IPR015300 -
Sto11g0743 393 Pfam B3 DNA binding domain 206 314 IPR003340 GO:0003677
Sto11g0743 393 Gene3D - 195 328 IPR015300 -
Sto11g0743 393 MobiDBLite consensus disorder prediction 1 78 - -
Sto11g0743 393 CDD B3_DNA 205 302 IPR003340 GO:0003677
Sto11g0743 393 MobiDBLite consensus disorder prediction 44 61 - -
Sto11g0743 393 PANTHER PROTEIN RAV1, PUTATIVE-RELATED 1 393 - -
Sto11g0743 393 Pfam AP2 domain 73 121 IPR001471 GO:0003700|GO:0006355
Sto11g0743 393 ProSiteProfiles AP2/ERF domain profile. 74 129 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g0743 Sto-Chr11 8364988 8366169 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g0743 1 393 B3 DNA Binding Superfamily AT1G25560 59.548 6.80e-148 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-RAV Sto11g0743 B3 2.8e-28 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto11g0743 11 8364988 8366169 Sto11g0743 11 8364988 8366169 ECH