Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g0731 ATGCAAAGCTTCAAGACTGTTCAATCCAACTCtccacaacaacaacaacaacaacatcaaCAACAACTCTATTGTCACCCTTCCTTCTTCCTTCGGGGAGAGCTTGGAGAGCTTCATCATTCCGAATCTCACTTTCATCAAGAAGATGCTGTTGATTTAAGCTCaaATTCTATGTTCACTGTAAAATCGAGCAATGTCGCTGTTCTTCCTATTAACTTGCAATACGGGGCATTGAACTCGGtattctttccttctttctttctctctaagtTTTCTCTGTGTTTTCCATTTGTATCTCAAACTCTGTCTTTGTGTGAACAGAACACTGGCTCTTCAGAATTTGCAGGGTGTCTCGATACAGGGCAGCAGCATCTCATGTACCACAGAGGAGGGCccacggcggcggcggcggccggCGCCGCCGTGCACATCGAGAATTGGGGGGATTCCGGGATGGTGGAGAATAGCCAACACACTGATACTTCCACTGATATCGATGTAGATGATAAAAACCAATGTAATAGAGTTCATGGACTTGTGGGTGTGGATTCCATGGATCAACTGCCAAAGGGCAAACCTGAAGACCAGaagACTCTTCGTAGGCTCGCTCAGAATCGTGAGGCTGCAAGGAAGAGTCGGTTAAGGAAAAAGGCATATGTACAGCAGTTGGAGAACAGTCGTCTCCGGCTCGCACAACTAGAGCAAGAGCTCCAACGTGCACGGCAGCAGGGTATGCATGTAGGAACTGGATTTGCAGGGGATCATGGTCGATCCATGGTTGGAAACGGTGCCTTAGCTTTTGATATGGACTACGCGCGTTGGGTTGACGAGCATCAACAACTTATCAACGACCTAAGATCGGCCGTAAATTCTCAAATGGGAGACAACGATTTACATCTTATCGTCGAGGGTGTCATGGCGCATTACGACGAAGTATTTAGGTTAAAGAGCGTGGGGGCAAAGGCTGATGTGATTCACATGCTTTACGGTATGTGGAAGACTCCGGCCGAGAGATGTTTCATGTGGCTCGGTGGATTCAGATCATCCGAACTTCTCAAGATAGTAAGGAACCACCTTGAGCCGTTGACCGAGCAGCAATTGATGGGCATTTATAATCTGCAGCAATCTTCGCTTCAAGCCGAGGATGCTTTAACACAAGGCATGGATGCATTGCAACAATCTCTAATGGAGACACTTTCCTCGACCTCCCTCGGGCCCACCGGAACCGGAAACGTCGCTGATTACATGGGCCAAATGGCGATTGCAATGGGCAAACTTGCTACATTAGAGAATTTCCTTCATCAgGCTGACCTCTTGAGGCAACAAACCCTACAGCAGCTGCAAAAAATCTTGACCACGCGACAAGCCGCCCGAGCCCTCCTCGTCATAAACGACTACGTCTCGCGTCTTCGAGCGCTTAGTTCATTATGGTTAGCACGTCCTAGAGAATGA 1452 0.4525 MQSFKTVQSNSPQQQQQQHQQQLYCHPSFFLRGELGELHHSESHFHQEDAVDLSSNSMFTVKSSNVAVLPINLQYGALNSVFFPSFFLSKFSLCFPFVSQTLSLCEQNTGSSEFAGCLDTGQQHLMYHRGGPTAAAAAGAAVHIENWGDSGMVENSQHTDTSTDIDVDDKNQCNRVHGLVGVDSMDQLPKGKPEDQKTLRRLAQNREAARKSRLRKKAYVQQLENSRLRLAQLEQELQRARQQGMHVGTGFAGDHGRSMVGNGALAFDMDYARWVDEHQQLINDLRSAVNSQMGDNDLHLIVEGVMAHYDEVFRLKSVGAKADVIHMLYGMWKTPAERCFMWLGGFRSSELLKIVRNHLEPLTEQQLMGIYNLQQSSLQAEDALTQGMDALQQSLMETLSSTSLGPTGTGNVADYMGQMAIAMGKLATLENFLHQADLLRQQTLQQLQKILTTRQAARALLVINDYVSRLRALSSLWLARPRE 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g0731 483 Pfam Seed dormancy control 282 356 IPR025422 GO:0006351|GO:0043565
Sto11g0731 483 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 200 215 IPR004827 GO:0003700|GO:0006355
Sto11g0731 483 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 195 239 IPR004827 GO:0003700|GO:0006355
Sto11g0731 483 CDD bZIP_HBP1b-like 197 249 - -
Sto11g0731 483 Gene3D - 196 247 - -
Sto11g0731 483 ProSiteProfiles DOG1 domain profile. 264 480 IPR025422 GO:0006351|GO:0043565
Sto11g0731 483 Pfam bZIP transcription factor 196 235 IPR004827 GO:0003700|GO:0006355
Sto11g0731 483 PANTHER TRANSCRIPTION FACTOR PERIANTHIA 45 483 - -
Sto11g0731 483 SMART brlzneu 193 246 IPR004827 GO:0003700|GO:0006355
Sto11g0731 483 PANTHER TRANSCRIPTION FACTOR TGA9 45 483 - -
Sto11g0731 483 SUPERFAMILY Leucine zipper domain 197 240 IPR046347 GO:0003700|GO:0006355
Sto11g0731 483 Coils Coil 216 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g0731 Sto-Chr11 8283407 8286484 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g0731 23 483 bZIP Transcription Factor Family AT1G68640 59.315 8.71e-166 474
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Sto11g0731 DOG1 3.4e-29 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto11g0731 11 8283407 8286484 Sto11g0731 11 8283407 8286484 ECH