Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g0718 ATGAAGGTTTTCGTGAAGACTCTCAAAGGCACCCACTTCGAAATCGAAGTGAAGCCTGAACAAACGGTTACTGAAGTGAAGAAACATATAGAAACTGTCCAGGGTGCAGATGTCTATCCTTCTGTAAAGCAAATGCTTATTCATCAAGGGAAAGTACTCAAAGATGATACAACATTGGAGGAAAATAAAGTAGCTGAAAACAGTTTCATTGTCATTATgctgtcaaagAGCAAAAGCTCTTCTGGCGAGGGATCTACCACAACTGCACCATCAGTTAAGGCCCCACAGACAAGTTCCGCTCCTACATCAGCCCCAGTGTCAACGGCACTTGAAGCTCCTGCTGCAGCTGGGGCACCAAACCTCATTTCAACTTTTGACAGGCCTGTATCTGTAACTGCACCTACAGCTACACCTACGCCAGGGTCTGATGTCTATGGGCAGGCAGCATCTAATCTTGTTGCTGGAATCAACCTGGAGGGAACAATTCAGCAAATTCTTGATATAGGTGGAGGGAGTTGGGACAGGGATACTGTTGTCCGTGCTCTTCGTGCTGCTTACAACAACCCTGAGAGAGCTATTGAATATTTGTATACAGGTATCCCGGAGCAAGCTGCAGCTCCACCTGTGGCCCAAGTGCCTGAAAGTGGTGTACAAGCTGCAGATCCTTCGGCTACTGCTCCTCAAGCAGCAGCTGTTCCTTCAAGTGGACCTAATGCCAATCCCTTAGATCTATTTCCCCAGGGCTTGCCAAATGTTGGTGCTGCTACTGGCACTGGAGGTGCTGGTGCAGGCAACCTTGATTTTCTGCGCAACAGTCAACAGTTCCAAGCCTTGCGAGCCCTAGTGCAGAGTAATCCACAAATATTACAGCCTATGCTTCAAGAGCTTGGGAAACAAAATCCCCAACTCATGAGATTGATTCAAGAGCATCAAGCTGACTTCCTTCGCCTGATAAACGAACCCGGGGAAGGAGGCGAGGGGAATATAATCGGGCAGCTGGCTAATGCCTTGCAAGAGCACACGGTATCTGTCACCCCTGAGGAGCGTGAAGCAATTGAACGtCTTGAAGCAATGGGTTTTGATCGAACGCTTGTCTTGGAGGTGTACTTTGCTTGtaacaaaaatgaagaaatggcTGCGAACTATCTCTTAGATCACGGACAGGAGTTTGAGGAATGA 1179 0.4673 MKVFVKTLKGTHFEIEVKPEQTVTEVKKHIETVQGADVYPSVKQMLIHQGKVLKDDTTLEENKVAENSFIVIMLSKSKSSSGEGSTTTAPSVKAPQTSSAPTSAPVSTALEAPAAAGAPNLISTFDRPVSVTAPTATPTPGSDVYGQAASNLVAGINLEGTIQQILDIGGGSWDRDTVVRALRAAYNNPERAIEYLYTGIPEQAAAPPVAQVPESGVQAADPSATAPQAAAVPSSGPNANPLDLFPQGLPNVGAATGTGGAGAGNLDFLRNSQQFQALRALVQSNPQILQPMLQELGKQNPQLMRLIQEHQADFLRLINEPGEGGEGNIIGQLANALQEHTVSVTPEEREAIERLEAMGFDRTLVLEVYFACNKNEEMAANYLLDHGQEFEE 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g0718 392 SUPERFAMILY UBA-like 157 204 IPR009060 GO:0005515
Sto11g0718 392 SUPERFAMILY UBA-like 337 389 IPR009060 GO:0005515
Sto11g0718 392 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 345 386 IPR015940 -
Sto11g0718 392 SUPERFAMILY XPC-binding domain 262 328 IPR036353 GO:0003684|GO:0006289|GO:0043161
Sto11g0718 392 Pfam XPC-binding domain 266 322 IPR015360 GO:0003684|GO:0006289|GO:0043161
Sto11g0718 392 Pfam UBA/TS-N domain 161 196 IPR015940 -
Sto11g0718 392 Pfam UBA/TS-N domain 348 383 IPR015940 -
Sto11g0718 392 Gene3D - 151 201 - -
Sto11g0718 392 CDD UBA1_Rad23_plant 152 201 - -
Sto11g0718 392 Gene3D - 1 80 - -
Sto11g0718 392 SUPERFAMILY Ubiquitin-like 1 80 IPR029071 -
Sto11g0718 392 SMART CBM 264 307 IPR006636 -
Sto11g0718 392 PRINTS DNA repair protein Rad23 signature 292 314 IPR004806 GO:0006289
Sto11g0718 392 PRINTS DNA repair protein Rad23 signature 342 358 IPR004806 GO:0006289
Sto11g0718 392 PRINTS DNA repair protein Rad23 signature 359 373 IPR004806 GO:0006289
Sto11g0718 392 PRINTS DNA repair protein Rad23 signature 374 389 IPR004806 GO:0006289
Sto11g0718 392 SMART uba_6 348 385 IPR015940 -
Sto11g0718 392 SMART uba_6 158 198 IPR015940 -
Sto11g0718 392 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Sto11g0718 392 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 391 - -
Sto11g0718 392 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 155 199 IPR015940 -
Sto11g0718 392 MobiDBLite consensus disorder prediction 78 106 - -
Sto11g0718 392 SMART ubq_7 1 75 IPR000626 GO:0005515
Sto11g0718 392 Coils Coil 293 313 - -
Sto11g0718 392 MobiDBLite consensus disorder prediction 223 251 - -
Sto11g0718 392 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Sto11g0718 392 PANTHER UV EXCISION REPAIR PROTEIN RAD23-RELATED 1 391 - -
Sto11g0718 392 MobiDBLite consensus disorder prediction 78 107 - -
Sto11g0718 392 Gene3D - 339 386 - -
Sto11g0718 392 CDD Ubl_Rad23 1 74 - -
Sto11g0718 392 Gene3D - 255 322 IPR036353 GO:0003684|GO:0006289|GO:0043161
Sto11g0718 392 TIGRFAM rad23: UV excision repair protein Rad23 1 391 IPR004806 GO:0006289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g0718 Sto-Chr11 8211199 8217742 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g0718 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 35.135 1.95e-06 45.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto11g0718 11 8211199 8217742 Sto11g0718 11 8211199 8217742 ECH