Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g0664 ATGGATTCTAACACTTCCAGCTTTGTTTTGAACTCTTCAACTTTTCACTCTGCTTTCTACCAAGACAAACAGCATCATGATGATGGAATGATTGATCTGGGCCTTAGTCTCAGAACTGTGCAACCTGAAGCCTATCATTCTTCTAACAATTGTATGTCTCACTCACaatctcttatttatttttttgccaaACTCAGTGCATTGGTAAGTCTTGGAGGATATGATGACCTTATGGAGTGGCCACAATCTAATAATCTGAACCTGAAGAGCTCAAGCACAATGCATTCTAGATCTATCCCAGAGAACTTTGATGAAGAAATAGAGGGTGTCCAGAGCAATGAGAGGTGGGCTTATGTGAAGGTTAATATGGATGGAGTCACAGTTGGAAGGAAGATTTGTGTCCTTGATCATGAAGGCTACCAAAGTCTAGCAAACCAATTAGAAAACATGTTTGGTGAGCATaGAAGCAAATCTATTTCTGGTTTAAAATTGTTCCAATATGGGTCAGAGTACTCACTGTTCTACAAAGACAGAGAAGATCAATGGAGAATTGTAGGTGATGTCCCATGGAAAGAATTTGTAGAATGTGTGAAGAGGTTGAGGATTGCAAGAAAGAATGCAGCCTTTGTTTCTTGTTCTTCTAGCTACACCTAA 654 0.3838 MDSNTSSFVLNSSTFHSAFYQDKQHHDDGMIDLGLSLRTVQPEAYHSSNNCMSHSQSLIYFFAKLSALVSLGGYDDLMEWPQSNNLNLKSSSTMHSRSIPENFDEEIEGVQSNERWAYVKVNMDGVTVGRKICVLDHEGYQSLANQLENMFGEHRSKSISGLKLFQYGSEYSLFYKDREDQWRIVGDVPWKEFVECVKRLRIARKNAAFVSCSSSYT 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g0664 217 SUPERFAMILY CAD & PB1 domains 116 202 - -
Sto11g0664 217 ProSiteProfiles PB1 domain profile. 116 207 IPR000270 GO:0005515
Sto11g0664 217 Gene3D - 110 215 - -
Sto11g0664 217 Pfam AUX/IAA family 104 207 IPR033389 -
Sto11g0664 217 PANTHER AUXIN-RESPONSIVE PROTEIN IAA34 1 210 - -
Sto11g0664 217 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 1 210 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g0664 Sto-Chr11 7695612 7698046 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g0664 111 202 B3 DNA Binding Superfamily AT1G19220 38.043 3.18e-11 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Sto11g0664 AUX_IAA 9.6e-25 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto11g0664 11 7695612 7698046 Sto11g0664 11 7695612 7698046 ECH