Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g0658 ATGAATTGTGTTCCTAGTTTTGCTCAAGGCTTTGAGATTCTGCTGGTTCATAATGACACTTTGTCACTCATCAACCTCTCATCCATGCTTGAGAATTACTCATTCAAAGTTACTGTTACTGATGAAGCAAAAGCAGCCATGTCCATGATTTCCAAACATGAAGGCTATTTCAAGTTGGTAATGGCTAAAGCTAACATGCCTGATATGGatactctttctttcctccaaTTCCTCCATAGAAAAGACATCCCTGTCATCTTCATATCCTCTGGGGAATACAATGAAGTAACTTGGAAAGCATTGGCTAAAGGATCATGCTATTTCCTTGAAGAACCAATCCTTTTTCAGGATCTTAAATATGTGTGGCAGCATGTGTATCACAGAAAACTCTACTCTGCAAAGAGAACTCAAAAAGCAAAATGTCTAGACAAGGTTCATGGAATTCATGATCAAAGAAGATGCATGCAAAAGGACAAGAGGAAAAAATATCAGATGAATTTTGACAGCAATCATCTTACTGCTGCtatggaggaggaagaggaaaggAGAGAACGTTCCTACTATGGATATGCTGAGAAAAAGTCACGTATTGTATGGACTCCTGAGCTACATCAGAAGTTTTTAGATGCCATTGATGCTCTAGGCAACCAGAACAATATTCGTCCGAAAGCAATACTAGAACAGATGAATGTGCCTGAACTGACAGCTCGCCAAGTTTCAAGTCATCTCCAGAAGTACAAAACTCAAGCACAGATAAATCAGCTAGTTTGCAATCCTCCAGTGagtaatttctcaaattttgatGGAAGATTCCAGTACTACTCACCATTTCAGAGCCAGGGTTATTCAGGCGTAGGATATCCCAGAAGTGCATATGATAAATCAGGAGCTGAATTTGGTTTAGGTTTCCCTGCCCCATCATCATCCCTGAATGAGAGCCAAAATCAAATGCAGTTTCCAGCAGTGGTGGAAACCTCAACCTCtgcatatgaacttccatttcCAACAGCAATGGCCAATTATGGAAGCCAAAACCTAGGAGCTGTAGTGGGACAACCTATGACTGATGATGCTTCAATGCATCAAAACCAACCCATGATGACAGCATATGATAGTACTATGCAAATGCTTGAGGAAGATTGTAATCAGTATGAAAGTTCTCCAAATGGACTGCTTCCAAATCAAGTTGATGAGTACACTGAGATGCTAAGGAACATTCTTCTTGGAGATAGCCCTAATCCTCAACAGACTCACTTCTGA 1260 0.3802 MNCVPSFAQGFEILLVHNDTLSLINLSSMLENYSFKVTVTDEAKAAMSMISKHEGYFKLVMAKANMPDMDTLSFLQFLHRKDIPVIFISSGEYNEVTWKALAKGSCYFLEEPILFQDLKYVWQHVYHRKLYSAKRTQKAKCLDKVHGIHDQRRCMQKDKRKKYQMNFDSNHLTAAMEEEEERRERSYYGYAEKKSRIVWTPELHQKFLDAIDALGNQNNIRPKAILEQMNVPELTARQVSSHLQKYKTQAQINQLVCNPPVSNFSNFDGRFQYYSPFQSQGYSGVGYPRSAYDKSGAEFGLGFPAPSSSLNESQNQMQFPAVVETSTSAYELPFPTAMANYGSQNLGAVVGQPMTDDASMHQNQPMMTAYDSTMQMLEEDCNQYESSPNGLLPNQVDEYTEMLRNILLGDSPNPQQTHF 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g0658 419 Gene3D - 191 252 - -
Sto11g0658 419 CDD REC_typeB_ARR-like 13 126 - -
Sto11g0658 419 Gene3D - 11 161 - -
Sto11g0658 419 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 191 251 IPR017930 -
Sto11g0658 419 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR11-LIKE 7 410 - -
Sto11g0658 419 SUPERFAMILY Homeodomain-like 192 248 IPR009057 -
Sto11g0658 419 Pfam Myb-like DNA-binding domain 199 247 IPR001005 -
Sto11g0658 419 PANTHER TWO-COMPONENT RESPONSE REGULATOR 7 410 IPR045279 GO:0009736
Sto11g0658 419 ProSiteProfiles Response regulatory domain profile. 12 126 IPR001789 GO:0000160
Sto11g0658 419 SUPERFAMILY CheY-like 10 138 IPR011006 -
Sto11g0658 419 Pfam Response regulator receiver domain 13 118 IPR001789 GO:0000160
Sto11g0658 419 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 194 248 IPR006447 GO:0003677
Sto11g0658 419 SMART REC_2 11 122 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g0658 Sto-Chr11 7642053 7648619 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g0658 4 278 Response Regulator Gene Family AT1G68210 32.588 4.19e-40 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Sto11g0658 Response_reg 5.6e-10 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto11g0658 11 7642053 7648619 Sto11g0658 11 7642053 7648619 ECH