Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g0645 ATGCCCTCGATTCTTCTCCCTTCACTCCCACCACCATACCCCACTTCTCCGGCGAATCTCACAACCCTAAAACCCTCAATTCCACCTCCCTTCCTCACGATGAAGGATCGGCCTCCGCCGTCCTCCTACGGCACCAACATTTACGTCCCGCCGCACCACCGTCTACGCCGCACCGTCGTCACCTCCGCCGCTTACAGCTCTCATGCTTCTGTTGACTCCAAGCTTTGTGGGACCCAAGGCGTAGTTTTAAACCCTAAGGCTACCAATGctactgctgctgctgctgctctGTCTCACTCGCAGGCCAAGTTGCAGGAGCAAGTTCCTAATAAGTTGAATTCGCGCTATGTTTCTGCTTATGATGACGGGATTTCCGAGGAAGGGTCGGATCGCGAGTTTGAGACGTCTTCACTATTGTTTGATTCTCAGAGTGCTTCACCCAATGATAACAGTGATGAGTGGAAGCAGAAATTTATTATGCTTTTAAATGACAAGGGTAGACAAGAGTTGATCTCAAGGGAGAAGAAAGATAGACGTGATTTTGACCAAATAGCAGTTTTGGCAAGAAGAATGGGATTGTATAGTCATATGTATGCAAAAGTTGTTGTCTTCAGTAAGGTGCCACTGCCAAATTACAGATATGATTTGGATGATCGACGGCCACAGAGAGAGGTGAATGTGCCACTTACCATGTTTAAAAGAGTTGATGGATATCTTAAAGAATACCTATCTGAAAAGTCTAGGATGAAGGAAAGCTTTTCGGATTTGTCATCCACAAGATCTAGCAGTAGTGGAAGTTTTGGTAATGATGAAGGGCTTTTTGAGCAACCTGAACTACTAGCTTCCAGTAAGTCTGCTGTAGAGAAAATTCTCCGCCGCAGAAGTTTACAAATGCGTGATCAGCAAAAAGCTTGGCAGTTATGTGACCTTAGCCTAAACGGGTTTGTAGAAAAGGATTTGGATGGAGGACTTATTAGTATGATTTTTGAATCTCCAGAAGGAAGCAGATTGCTGGAATTTCGTAGAAGTCTCCCAGCTTATAAAGAGAAGGAAGCAATATTGTCAGCCATATCGAGGAATCAGGTTATCATCATCTCCGGTGAAACAGGTTGTGGCAAGACAACACAAATTCCTCAATTCATTTTAGAATCTGAGATAAATTCTGTTAGTGGAGCTCAATGTAATATTATATGCACACAGCCTAGACGCATTTCCGCCATTTCTGTTTCTGAAAGAGTCGCCTTTGAGAGAGGAGAGAAATTGGGTGAATCTGTTGGATATAAAGTTcgattggagggaatgaaaggGAGGGATACCCATCTTCTCTTTTGCACCACAGGcatattattaagaaaattgCTAGCTGATAGAAACTTGAAAGGTATAACACATGTTATTGTGGATGAAATTCATGAGCGTGGCATGAACGAAGATTTTCTGCTTATTGTTCTTAAAGATCTCCTTCCCCGCAGACCAGAACTGAGATTGATTTTAATGAGTGCCACCCTCGATGCAGAGCTTTTCTCTTCTTACTTTAATGGAGCTCCAATTATGAAAATTCCAGGATTCACATACCCAGTCAGAACTCATTTTTTGGAGAACATTCTGGAAATGACGGGCTACTGTTTGACTGCTTACAATCAAATTGATGATTACGGTCAAGAAAGGGTGTGGAAATTGAACAAACAGACCCCGAGAAAGAGGAAAAGCCAAATTGCCTCCGCTGTAGAGGATGCTGTTAAAGCTGCTGATTTTAAAGAGTACAGCCCACAGACGCAGGAATCTTTGTCACATTGGAATCCTGACTGTATTGGTTTTAATCTCATAGAATATATCTTATGCAATATATGTGAGAATGAAGGGCCTGGAGCTGTTTTGGTTTTTATGACTGGATGGGATGATATCAGCTCTATGAAAGATAAGCTCCTAGCACATCCTGTCTTAGGTGATCCAAGTCGAGTTTTGTTGCTCACATGCCATGGATCAATGGCTAGTTCAGAACAGAGGTTAATATTTGAAGAGCCCGAAGATGGAGTAAGGAAAATAGTGCTAGCAACAAATATTGCTGAAACGAGTATAACAATAAATGATGTTGTGTTTGTTCTGGACTGCGGAAAGGCAAAAGAAACATCATATGATGCACTGAATAATACTCCTTGTTTGCTTCCCACCTGGATCTCCAAGGTTTCTGCGCAGCAAagAAGAGGAAGAGCTGGTCGTGTTCAACCAGGGGAATGTTACCATCTCTATCCTAGATGTGTATATGAGGCTTTTGCGGAGTATCAATTGCCAGAAATTCTGAGGACACCTTTGCAATCCCTATGTCTGCAAATCAAAAGTTTAAAACTCGGAAGTATTTCGGAGTTCTTGTCTAGGGCTTTGCAGTCTCCTGAGATTCTTGCGGTGCAAAATGCAATTGAATATTTGAAAGTAATTGGGGCCTTGGATGAGAATGAAAATCTTACTACCCTTGGGCGCTATTTGACAATGCTTCCAATGGAACCCAAACTCGGCAAGATGCTCATATTAGGTGCTATCTTCAATTGCTTGGATCCCATATTAACTGTTGCTGCTGGCCTCAGTGTGAGAGATCCTTTTCTAACACCATTGGATAAAAAAGATCTTGCAGAGGCAGCAAAATCTCAATTTTCACGTGATTATAGTGACCATCTTGCACTTGTTAGGGCTTATGAGGGCTGGAAAGATGCTGAGTTAGACCTTGCTGGGTTTGAATACTGCtggaaaaattttctttcagCTCAATCAATGAAAGCTATTGATGCACTCCGCCGGGAGTTCTTCTCTCTGCTTAAGGATATTGGATTAGTTGATAGCAACACAACCAGCTGCAATGCTTGGAGCCATGATGTACATCTTATCCGGGCAGTTATTTGTTATGGCCTATATCCTGGAATTTGCTCTGTTGTGCATAATGAGAAGTCATTTTCACTGAAAACAATGGAGGATGGTCAAGTGCTACTATATTCAGATGGGCTCTTAAAAATGTTAGGAGGATATCTGGAGTTCTTCATGAAACCTCCGGTTGCTGACATGTATCAGATTATAAGGAGAGAACTTGATGATCTCATTCAAACCAAGCTACAATTTCCAAGGATGGACATACACTCATTTCATGAGCTTCTTTCTGCTGTACGGTTGTTGATTTCTGAGGATCAGTGTGAAGGCAGATTTGTATTCGGTCGCCAGGTCCTCAAACCCTCGAAGCCGTCTGTAATAGTCTCACATCCAGCATTGGGTTCAAGGACTGAAAGTGGACCTGGGGGTGATAATTCTAAAAGTCAGCTTCAAACATTGCTTACAAGGGCTGGATATGCTGCACCCACCTACAAGACTATGCAATTGAATAACAATCAATTTCGGGCTACAGTCGAGTTTAATGGAATGCAGATAATGGGCCAACCTTGTAACAACAAGAAAAGTGCAGAAAAAGATGCTGCAGCTGAGGCTCTGCAGTGGCTTGTGGGAGGAAGGCAGACAGGCAATGAGAAAAGTGAAGCAAGAAACTACAAGTCAAAGCTTGGGGGAATGATGCATTGCATCTTCAGCTTCTCCAGTGAGAAAATAGATGGAAATCTGATGATTCTTTGTATAGTTTCTAATTATGGGTATCTTGAAATCAACACAGAAGTCCTTCTGGTCTATGTTGGGGAACAGAATgaggatgaaaatgaaaatgattgggTTTTGGAGCTATGA 3717 0.4127 MPSILLPSLPPPYPTSPANLTTLKPSIPPPFLTMKDRPPPSSYGTNIYVPPHHRLRRTVVTSAAYSSHASVDSKLCGTQGVVLNPKATNATAAAAALSHSQAKLQEQVPNKLNSRYVSAYDDGISEEGSDREFETSSLLFDSQSASPNDNSDEWKQKFIMLLNDKGRQELISREKKDRRDFDQIAVLARRMGLYSHMYAKVVVFSKVPLPNYRYDLDDRRPQREVNVPLTMFKRVDGYLKEYLSEKSRMKESFSDLSSTRSSSSGSFGNDEGLFEQPELLASSKSAVEKILRRRSLQMRDQQKAWQLCDLSLNGFVEKDLDGGLISMIFESPEGSRLLEFRRSLPAYKEKEAILSAISRNQVIIISGETGCGKTTQIPQFILESEINSVSGAQCNIICTQPRRISAISVSERVAFERGEKLGESVGYKVRLEGMKGRDTHLLFCTTGILLRKLLADRNLKGITHVIVDEIHERGMNEDFLLIVLKDLLPRRPELRLILMSATLDAELFSSYFNGAPIMKIPGFTYPVRTHFLENILEMTGYCLTAYNQIDDYGQERVWKLNKQTPRKRKSQIASAVEDAVKAADFKEYSPQTQESLSHWNPDCIGFNLIEYILCNICENEGPGAVLVFMTGWDDISSMKDKLLAHPVLGDPSRVLLLTCHGSMASSEQRLIFEEPEDGVRKIVLATNIAETSITINDVVFVLDCGKAKETSYDALNNTPCLLPTWISKVSAQQRRGRAGRVQPGECYHLYPRCVYEAFAEYQLPEILRTPLQSLCLQIKSLKLGSISEFLSRALQSPEILAVQNAIEYLKVIGALDENENLTTLGRYLTMLPMEPKLGKMLILGAIFNCLDPILTVAAGLSVRDPFLTPLDKKDLAEAAKSQFSRDYSDHLALVRAYEGWKDAELDLAGFEYCWKNFLSAQSMKAIDALRREFFSLLKDIGLVDSNTTSCNAWSHDVHLIRAVICYGLYPGICSVVHNEKSFSLKTMEDGQVLLYSDGLLKMLGGYLEFFMKPPVADMYQIIRRELDDLIQTKLQFPRMDIHSFHELLSAVRLLISEDQCEGRFVFGRQVLKPSKPSVIVSHPALGSRTESGPGGDNSKSQLQTLLTRAGYAAPTYKTMQLNNNQFRATVEFNGMQIMGQPCNNKKSAEKDAAAEALQWLVGGRQTGNEKSEARNYKSKLGGMMHCIFSFSSEKIDGNLMILCIVSNYGYLEINTEVLLVYVGEQNEDENENDWVLEL 1238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g0645 1238 Gene3D - 326 522 IPR027417 -
Sto11g0645 1238 Pfam DEAD/DEAH box helicase 352 504 IPR011545 GO:0003676|GO:0005524
Sto11g0645 1238 Pfam Helicase associated domain (HA2) 805 879 IPR007502 GO:0004386
Sto11g0645 1238 SMART ha2_5 804 894 IPR007502 GO:0004386
Sto11g0645 1238 SMART DRBM_3 1098 1161 IPR014720 -
Sto11g0645 1238 CDD SF2_C_RHA 588 750 - -
Sto11g0645 1238 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 351 917 IPR027417 -
Sto11g0645 1238 PANTHER ATP-DEPENDENT RNA HELICASE 104 997 - -
Sto11g0645 1238 PANTHER ATP-DEPENDENT RNA HELICASE 998 1112 - -
Sto11g0645 1238 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 608 782 IPR001650 -
Sto11g0645 1238 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 354 521 IPR014001 -
Sto11g0645 1238 Gene3D - 605 761 IPR027417 -
Sto11g0645 1238 SMART ultradead3 342 535 IPR014001 -
Sto11g0645 1238 Pfam Helicase conserved C-terminal domain 610 741 IPR001650 -
Sto11g0645 1238 Pfam Double-stranded RNA binding motif 1098 1160 IPR014720 -
Sto11g0645 1238 SUPERFAMILY dsRNA-binding domain-like 1092 1160 - -
Sto11g0645 1238 Gene3D - 1081 1165 - -
Sto11g0645 1238 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH5, MITOCHONDRIAL 998 1112 - -
Sto11g0645 1238 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH5, MITOCHONDRIAL 104 997 - -
Sto11g0645 1238 CDD DEXHc_RHA-like 360 520 - -
Sto11g0645 1238 SMART helicmild6 636 742 IPR001650 -
Sto11g0645 1238 Gene3D - 784 888 - -
Sto11g0645 1238 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1097 1162 IPR014720 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g0645 Sto-Chr11 7532881 7542310 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto11g0645 11 7532881 7542310 Sto11g0645 11 7532881 7542310 ECH