Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g0639 TTGTTCGTTCATGGTTCACTCCTTTCATTTCCTCTCGTCTTCGCACTCTTTGAGGTCTTCCAGCCGCCACGAGTTCCGGGTCCGAATGCGTGGTTTAACTACTCAATGACCCTCTCTTTCAGAGCTTCAAAAGCTTTTGCTGTTGCTGCACCCACCATAACTCTCAGAGTACGTTTTCTCTTCCCCTTCTGTTCCACTCTATATAGCTGCACCTCAAGCTCTAGTTTGGCTTCGATTCCTGAGGTCCATTATAGAGAGCTTATCTTCGACGCTGTAGAAGAGAAGCCTTGGGCTTTTTGCAATTGTAATTGGGTGTCTGATCAATTTCGAGCAGTGGTTGTTGAACCCGAGTTGTTCGTTCGGGTTCTTAATTCAATTCGAGATAGACCCAAAATTGCTTTGCGCTTCTTTAGATGGGTGCAGGGCCAACCCGAGTATAAGGGATCTGAATTGGCGTTTGTTGTAATTCTTGAGATTCTTGCACAGAATAATCTGATGCGATCGGCGTATTGGGTTATGGAGAAGGTCATTAGTTTGAACATGAATGGAATTGTAGATGTTTTTCTTAATGGATGTGTGTCTCCGGAGGTATCAATTAAGCTTCTTGATCTGTTGCTTTGGATTTATACCAAAAAGTCGATGTTAGAGAAGTGCTTATGTGCTTTTGATAAAATGATTCATAATGGGTTATTGCCAGATGTGAAGAACTGTAATAGGATTCTTAGGACACTTGGGGATAAAAGTCTGGTCAACAAAGCAAGGGAAGTTTATAATGTAATGACTGAGTATGGGATCAAGCCAACAACTGTCACGTATAATACTATGTTGAATTCATTTTGCAAGGAAGGGGAAATTCAGCAGGCTTTAGACCTTCTACTGGAGATGCAAGAGAAGGGGTGTCTTCCCAATGATGTaacttataatattttgataaatggttTGTCTAACAATGGAGAATTAGAGAAAGCCAAGGAATTGATTGAGGAGATGCTGAAATCTGGACTGAAAGTTTCAGCTTACTCATATAACCCTTTGATTCATGGGTACTGCAAGAAAGGACTACTTAGAGAAGCATCAATCCTAGGGGAGGATATGTTGAATAGAGGAGCTTCGCCTACTGTAGCAACCTACAATACGTTTATGTATGGCTTTTGTAAGTGGGGAAGAATGACCGATGCAAGGCAGCAGTTGTCTGATATGCTAAATAAGAATCTCCTGCCAGACATCGTTTCATACAACACTCTAATTTATGGTTACTGTAGGTTGGGGAACTTAGAAGATGCATTTCACTTATTTGATGAGTTACTATGTATGAAGCTTATTCCCACTGTTGTGACATATAATACACTTATAGATGGTCTTTGCAGACTGGGCAATTTGGAGGTTGCTCAGCAGCTCAAAGAAGAAATGATCATTCGAGGGCCTAATCCTGATATTTATACTTTCACAATTCTTGTAAGAGGATCATGCATGCTGGGAAACTTGCCAATGGCTAAGAAACTATTTGATGAGATGCTTCACAGAGGATTGCAGCCAGATCGATTTGCTTACACTACTCGAATAGTAGGTGAACTGAAGCTTGGTGACTCATCTAAGGCTTTTGGTATGCAAGAAGAAATGCTAGCTAAAGGCTTTCCTCCTGATTTGATCACATATAATGTCTTCATAGATGGGCTCTGTAAATTGGGCAATTTGGAAGAAGCAAGTAAACTTGTGAAGAAAATGATTCATGATGGATATGCTCCAGATCATGTAACCTATACTAGCATCATTCATGCCCACTTGGTAGCTGGCCATCTTAGGAGGGCTAGAGTGCTATTCTATGAGATGTTGAGCAGAGGAATATTCCCTTCAGTCGTCACTTACACAGCTTTgattcattcacatgcagtTAGTGGACGGTTGGAACTTGCTATTATGTACTTCTTGGAAATGCAAGAGAAGGGTGTTTGTCCAAATGTGATCACATACAATGCTTTGATAAACGGTCTTTGCAAAGTGCGAAGGATGGATCAAGCATACAAGTTTTTTATGGAGATGCAAGAAAAGGGTCTATCTGCAAATAAGTATACCTACACTATTTTAATAAATGAGAACTGCAACATGGGCTATTGGCAGGAAGCCGTGAGATTGTATAAGGATATGCTAGATAAGGAAATTGAGCCTGATTCTTGTACACACAGTGCACTTCTAAAACATCTAAACAAAGATTATAAATTACATGCAATTCAATATCTTGAGAATTTGATTGGAGGCATGCCattatttgaattgattttgcCTCACCAAGGTGTGAATTGCCCCAGAAGAAGTAAAATTGTAAAGTTTTCTGCCCATCTTGTCAAGATGAAGCTACTGATGGGTTTTTATTATCAGTTAGAAGGGCAAACCGCAAATATTTGCAATGCGACTAGACATTGGGGTGAAGCTGTGGAGAATTATACTGTAGCCATAATGCCATATGGTGAGACAGTATGA 2478 0.3947 LFVHGSLLSFPLVFALFEVFQPPRVPGPNAWFNYSMTLSFRASKAFAVAAPTITLRVRFLFPFCSTLYSCTSSSSLASIPEVHYRELIFDAVEEKPWAFCNCNWVSDQFRAVVVEPELFVRVLNSIRDRPKIALRFFRWVQGQPEYKGSELAFVVILEILAQNNLMRSAYWVMEKVISLNMNGIVDVFLNGCVSPEVSIKLLDLLLWIYTKKSMLEKCLCAFDKMIHNGLLPDVKNCNRILRTLGDKSLVNKAREVYNVMTEYGIKPTTVTYNTMLNSFCKEGEIQQALDLLLEMQEKGCLPNDVTYNILINGLSNNGELEKAKELIEEMLKSGLKVSAYSYNPLIHGYCKKGLLREASILGEDMLNRGASPTVATYNTFMYGFCKWGRMTDARQQLSDMLNKNLLPDIVSYNTLIYGYCRLGNLEDAFHLFDELLCMKLIPTVVTYNTLIDGLCRLGNLEVAQQLKEEMIIRGPNPDIYTFTILVRGSCMLGNLPMAKKLFDEMLHRGLQPDRFAYTTRIVGELKLGDSSKAFGMQEEMLAKGFPPDLITYNVFIDGLCKLGNLEEASKLVKKMIHDGYAPDHVTYTSIIHAHLVAGHLRRARVLFYEMLSRGIFPSVVTYTALIHSHAVSGRLELAIMYFLEMQEKGVCPNVITYNALINGLCKVRRMDQAYKFFMEMQEKGLSANKYTYTILINENCNMGYWQEAVRLYKDMLDKEIEPDSCTHSALLKHLNKDYKLHAIQYLENLIGGMPLFELILPHQGVNCPRRSKIVKFSAHLVKMKLLMGFYYQLEGQTANICNATRHWGEAVENYTVAIMPYGETV 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g0639 825 Gene3D Tetratricopeptide repeat domain 192 318 IPR011990 GO:0005515
Sto11g0639 825 Gene3D Tetratricopeptide repeat domain 437 525 IPR011990 GO:0005515
Sto11g0639 825 Gene3D Tetratricopeptide repeat domain 526 631 IPR011990 GO:0005515
Sto11g0639 825 Gene3D Tetratricopeptide repeat domain 632 748 IPR011990 GO:0005515
Sto11g0639 825 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 548 582 IPR002885 -
Sto11g0639 825 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 268 302 IPR002885 -
Sto11g0639 825 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 408 442 IPR002885 -
Sto11g0639 825 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 688 722 IPR002885 -
Sto11g0639 825 SUPERFAMILY HCP-like 559 719 - -
Sto11g0639 825 Gene3D Tetratricopeptide repeat domain 319 436 IPR011990 GO:0005515
Sto11g0639 825 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 478 512 IPR002885 -
Sto11g0639 825 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 443 477 IPR002885 -
Sto11g0639 825 SUPERFAMILY HCP-like 277 581 - -
Sto11g0639 825 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 233 267 IPR002885 -
Sto11g0639 825 Pfam PPR repeat family 340 386 IPR002885 -
Sto11g0639 825 Pfam PPR repeat family 547 593 IPR002885 -
Sto11g0639 825 Pfam PPR repeat family 267 315 IPR002885 -
Sto11g0639 825 Pfam PPR repeat family 652 701 IPR002885 -
Sto11g0639 825 Pfam PPR repeat family 407 456 IPR002885 -
Sto11g0639 825 TIGRFAM PPR: pentatricopeptide repeat domain 585 618 IPR002885 -
Sto11g0639 825 TIGRFAM PPR: pentatricopeptide repeat domain 270 303 IPR002885 -
Sto11g0639 825 TIGRFAM PPR: pentatricopeptide repeat domain 480 513 IPR002885 -
Sto11g0639 825 TIGRFAM PPR: pentatricopeptide repeat domain 376 409 IPR002885 -
Sto11g0639 825 TIGRFAM PPR: pentatricopeptide repeat domain 340 373 IPR002885 -
Sto11g0639 825 TIGRFAM PPR: pentatricopeptide repeat domain 655 688 IPR002885 -
Sto11g0639 825 TIGRFAM PPR: pentatricopeptide repeat domain 305 338 IPR002885 -
Sto11g0639 825 TIGRFAM PPR: pentatricopeptide repeat domain 410 443 IPR002885 -
Sto11g0639 825 TIGRFAM PPR: pentatricopeptide repeat domain 690 724 IPR002885 -
Sto11g0639 825 TIGRFAM PPR: pentatricopeptide repeat domain 550 583 IPR002885 -
Sto11g0639 825 TIGRFAM PPR: pentatricopeptide repeat domain 620 654 IPR002885 -
Sto11g0639 825 TIGRFAM PPR: pentatricopeptide repeat domain 445 478 IPR002885 -
Sto11g0639 825 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 583 617 IPR002885 -
Sto11g0639 825 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 125 750 - -
Sto11g0639 825 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 338 372 IPR002885 -
Sto11g0639 825 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 513 547 IPR002885 -
Sto11g0639 825 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 303 337 IPR002885 -
Sto11g0639 825 Pfam PPR repeat 620 650 IPR002885 -
Sto11g0639 825 Pfam PPR repeat 516 545 IPR002885 -
Sto11g0639 825 PANTHER OS12G0152600 PROTEIN 125 750 - -
Sto11g0639 825 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 373 407 IPR002885 -
Sto11g0639 825 Pfam PPR repeat 473 505 IPR002885 -
Sto11g0639 825 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 653 687 IPR002885 -
Sto11g0639 825 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 618 652 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g0639 Sto-Chr11 7489116 7492136 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g0639 412 746 Glycosyltransferase AT1G05670 28.869 2.03e-34 139
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto11g0639 11 7489116 7492136 Sto11g0639 11 7489116 7492136 ECH