Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g0596 ATGGCCGGTGGAGTTGCCGGCGCCGTCGCCGGAGACCGCACACCGGAGCTCCTACGCTTAGTTAACGACATTGTCGGAATGTGCGGCGGAGCTGGAGGCTCCTCTTCCGTTGCTGCCATTGATGCCGACGCTGTGTTCAAGAAGGATTGCACCGATCTGGTTCGTCGGATCTCACTTCTCACGTATTTGTTCGAGGAGATTAGGGACGCGAGGAAGGCTGTCGTTGATTCTGGAAACTTGGATGCTTCCACTTCGTCCACTGGTTCATCATCTTCCTGGTCCTCTGATCTTGTGCTTGCTCTCAACTCTGCTAAGCGGCTTCTTTCCGTCGCAAGGAGCTTCCGTTCGAATTATTCTTCTGATGGAGCTGCAAAGACGATTGTATTCCAATTTCAGTGTGTTACATGGAAATTGGAAAAGCTATTAAGCATCCTACCATATGACCATTTGGAAATATCAGAGGAAGTCAGAGAACAGGTGGAGCTGGTGAGAACACAATTGAGACGAGCCACAGAAAAATATGGATCTATGATTTCAAAGCTGTCATCTTCTGACTTATCCCTATCACAGGCTCAACCAATTGGTCAGGTTCTTGGCAAATCTGTGAGTGGACTGCATAAACAAAATAGTTGTCCTAATAATTTGTCAGAACTAGAAAGCATCCCTAGAAGTGATGAATGGACAAGTTGCAGTGGGAATCAGGCAAGTTCTCGCTTGGAAAGGGCACAGAGCATCCCCACATGTACTGAGATTTCCTTAACTAATGTCATTGATCCTGAAAATCAAGAAAATTCTGGAGAGAAGAATCTGGCTGATGTTAAAAAGTCTGAAGCAATTGTAATTCCTGAAGATTTTCTTTGTCCTATATCCTTGGAGTTAATGAGGGATCCTGTTATTGTGGCCACAGGTCAGACATATGAGAGATCTTACATCCAGAGATGGATAGATGGGGGAAATACAACCTGTCCAAAGACTCAGCAAAAGCTCCAAAATTTGACCCTTACACCAAATTATGTTTTAAGGAGCCTCATAACTCAGTGGTGTACGGAGCACAACATCGAGCAGCCAACAGGACTAACAAATGGCAAAATAAAAAGGAGCGATGGATCATTCAGAGATGTTACAGGTGACATAGCAGCCATTGGAGCTCTGGTCCGGAAGCTCTCCAGCCGGGCCATTGAGGAGCGTAGAGCAGCCGTCACTGAAATCCGTTCACTTTCCAAAAGAAGCACAGACAACAGGATACTAATTGCCGAAGCAGGAGCTATTCCAGTTCTTGTTAACCTTTTAACATCAGAAGACGTTCAAACTCAAGAAAATGCAGTTACGTCCATTCTCAACCTCTCTATATATGAGAATAACAAAGGACTTATAATGCTTGCCGGTGCCATCCCATCCATTGTCCAAATCCTAAGAGCTGGAACCATGGAAGCAAGAGAAAACGCAGCCGCAACCCTCTTCAGCTTGTCACTTGCAGAtgagaacaaaataataatCGGTGCCTCAGGCGCTATCCCCGCTTTGGTAGAATTGCTCCAAAACGGCAGCCCCCGGGGGAAGAAGGATGCAGCAACAGCATTATTCAACTTATGCATATATCAAGGAAACAAGGGTAGAGCCACAAGAGCAGGGATCATTACAGCATTATTGAAGATGCTTACAGATTCAAGCAAACTAATGGTTGATGAAGCCCTGACAATAATGTCTGTTCTTGCTAGCCATCAAGAGGCTAAGGTTGCTATAGTAAAGGCCAGCACTATACCTGTTCTTATCGATCTTTTGAGAACGGGATTGCCTCGAAACAAAGAGAATGCAGCTGCCATTTTGCTTGCCTTGTGTAAGAGGGATTCTGAAAATCTGGCCTGTATAAGTAGACTTGGTGCTGTCATACCTTTGACTGAACTTGCTCGGAGTGGCACGGAGAGGGCCAAAAGGAAGGCTACTTCATTATTGGAGCATCTTCGGAAGATACAGAATCTCTAA 1983 0.4513 MAGGVAGAVAGDRTPELLRLVNDIVGMCGGAGGSSSVAAIDADAVFKKDCTDLVRRISLLTYLFEEIRDARKAVVDSGNLDASTSSTGSSSSWSSDLVLALNSAKRLLSVARSFRSNYSSDGAAKTIVFQFQCVTWKLEKLLSILPYDHLEISEEVREQVELVRTQLRRATEKYGSMISKLSSSDLSLSQAQPIGQVLGKSVSGLHKQNSCPNNLSELESIPRSDEWTSCSGNQASSRLERAQSIPTCTEISLTNVIDPENQENSGEKNLADVKKSEAIVIPEDFLCPISLELMRDPVIVATGQTYERSYIQRWIDGGNTTCPKTQQKLQNLTLTPNYVLRSLITQWCTEHNIEQPTGLTNGKIKRSDGSFRDVTGDIAAIGALVRKLSSRAIEERRAAVTEIRSLSKRSTDNRILIAEAGAIPVLVNLLTSEDVQTQENAVTSILNLSIYENNKGLIMLAGAIPSIVQILRAGTMEARENAAATLFSLSLADENKIIIGASGAIPALVELLQNGSPRGKKDAATALFNLCIYQGNKGRATRAGIITALLKMLTDSSKLMVDEALTIMSVLASHQEAKVAIVKASTIPVLIDLLRTGLPRNKENAAAILLALCKRDSENLACISRLGAVIPLTELARSGTERAKRKATSLLEHLRKIQNL 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g0596 660 SMART arm_5 492 532 IPR000225 GO:0005515
Sto11g0596 660 SMART arm_5 533 573 IPR000225 GO:0005515
Sto11g0596 660 SMART arm_5 574 614 IPR000225 GO:0005515
Sto11g0596 660 SMART arm_5 451 491 IPR000225 GO:0005515
Sto11g0596 660 SMART arm_5 410 450 IPR000225 GO:0005515
Sto11g0596 660 SMART arm_5 616 656 IPR000225 GO:0005515
Sto11g0596 660 SMART Ubox_2 284 347 IPR003613 GO:0004842|GO:0016567
Sto11g0596 660 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 462 504 IPR000225 GO:0005515
Sto11g0596 660 Gene3D - 362 659 IPR011989 -
Sto11g0596 660 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 421 463 IPR000225 GO:0005515
Sto11g0596 660 Pfam Armadillo/beta-catenin-like repeat 411 449 IPR000225 GO:0005515
Sto11g0596 660 Pfam Armadillo/beta-catenin-like repeat 493 531 IPR000225 GO:0005515
Sto11g0596 660 SUPERFAMILY ARM repeat 380 654 IPR016024 -
Sto11g0596 660 ProSiteProfiles U-box domain profile. 280 354 IPR003613 GO:0004842|GO:0016567
Sto11g0596 660 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 11 36 657 - -
Sto11g0596 660 SUPERFAMILY RING/U-box 279 355 - -
Sto11g0596 660 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 503 530 IPR000225 GO:0005515
Sto11g0596 660 PANTHER U BOX DOMAIN-CONTAINING 36 657 - -
Sto11g0596 660 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 281 355 IPR013083 -
Sto11g0596 660 Coils Coil 153 173 - -
Sto11g0596 660 CDD RING-Ubox_PUB 285 327 IPR045210 -
Sto11g0596 660 Pfam U-box domain 281 352 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g0596 Sto-Chr11 7076044 7078975 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g0596 1 656 U-box Gene Family AT1G23030 61.644 0.0 739
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto11g0596 11 7076044 7078975 Sto11g0596 11 7076044 7078975 ECH