Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g0580 TTGAATTTGCAACCCAGGCAAGTTGAGGTGTGGTTTCAGAACCGTAGGGCAagGAGTAAGCTGAAGCAGACAGAAATGGAGTGTGAATACCTAAAGAGATGGTTTGGATCACTGAGTGAGCAGAACAAGAGGTTACAGAAGGAAGTGGGGGAACTTAGGGCAATGAAAGTGGGCCCACCCACCGTCATTTCGCCTCACACGTGTCAGCCACTCCCCGCTTCGATCCTAACCATGTGTCCTCGCTGCGAGAGGATCACGACCACTAGTGCTGTCGCCGTCACCACCAATCTTACTACCAATAATGCCGACAAGAGTCCCGCGGTGGGCCCACGTTCTCGGCTAAAGTGGGGGCGCCGGCCCTGCAGTCTCGTTCGTTGCCCTAATTCGGCGGCTTGTTTTCCAGTATCTTCTTCCCATGTATGA 423 0.5319 LNLQPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLSEQNKRLQKEVGELRAMKVGPPTVISPHTCQPLPASILTMCPRCERITTTSAVAVTTNLTTNNADKSPAVGPRSRLKWGRRPCSLVRCPNSAACFPVSSSHV 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g0580 140 PANTHER - 1 101 - -
Sto11g0580 140 SUPERFAMILY Homeodomain-like 1 31 IPR009057 -
Sto11g0580 140 CDD homeodomain 1 23 IPR001356 GO:0003677
Sto11g0580 140 Pfam Homeobox associated leucine zipper 22 56 IPR003106 GO:0006355|GO:0043565
Sto11g0580 140 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-17 1 101 - -
Sto11g0580 140 Pfam Homeodomain 1 20 IPR001356 GO:0003677
Sto11g0580 140 Gene3D - 1 27 - -
Sto11g0580 140 SMART halz 22 65 IPR003106 GO:0006355|GO:0043565
Sto11g0580 140 ProSiteProfiles 'Homeobox' domain profile. 1 22 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g0580 Sto-Chr11 6927695 6930775 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g0580 1 102 Homeobox Transcription Factor Family AT1G70920 61.765 1.53e-34 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Sto11g0580 HALZ 2.4e-09 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto11g0580 11 6927695 6930775 Sto11g0580 11 6927695 6930775 ECH