Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g0560 ATGCCAGCTCTGAGCTCCGTGATATACCTGCAAGGGAAACCCAAGGCAGAAGGAGACTCTCATAATGGGAACTCCAACGGTGGAAGTAGTAGAAGAAGAGGGTTATTGCATGGGCAATCTCAGTCTGAGTCACAGCATCAAAGCTCAAGTAGCAGGTGGAGTCCAACGCCAGCACAATTGCTAGTGCTTGAAGAATTGTACAGACAAGGCACAAAAACACCCACTGCTGAACAAATCCAGCAGATTGCTTCCCAACTACGTCGTTTTGGCAAGATCGAAGGCAAGAACGTCTTCTACTGGTTCCAGAATCACAAGGCCAGAGAGCGCCAGAAACGACGTCGTCGTGAGATGGAGGAAGctgctcatcatcatcatcatcctcattCTGATGATTCACCTCAAGATAAGCAACACCCTCCAggtacacacacatacatacatacatatacactgaacttcaAAACAGGTTTGAGAGGGACTGGATATGAAGTTAAAGAGACAAAGAAGTGGGCATCTTCTTCAAACTGCAGTGGACTTGCAGAGAATTTCTTGGAAACTCCATTATGA 567 0.4162 MPALSSVIYLQGKPKAEGDSHNGNSNGGSSRRRGLLHGQSQSESQHQSSSSRWSPTPAQLLVLEELYRQGTKTPTAEQIQQIASQLRRFGKIEGKNVFYWFQNHKARERQKRRRREMEEAAHHHHHPHSDDSPQDKQHPPGTHTYIHTYTLNFKTGLRGTGYEVKETKKWASSSNCSGLAENFLETPL 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g0560 188 MobiDBLite consensus disorder prediction 18 55 - -
Sto11g0560 188 Gene3D - 33 139 - -
Sto11g0560 188 CDD homeodomain 52 106 IPR001356 GO:0003677
Sto11g0560 188 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 38 177 - -
Sto11g0560 188 Pfam Homeodomain 50 110 IPR001356 GO:0003677
Sto11g0560 188 MobiDBLite consensus disorder prediction 106 143 - -
Sto11g0560 188 SUPERFAMILY Homeodomain-like 46 114 IPR009057 -
Sto11g0560 188 MobiDBLite consensus disorder prediction 112 137 - -
Sto11g0560 188 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 38 177 IPR044555 GO:0003700|GO:0099402
Sto11g0560 188 MobiDBLite consensus disorder prediction 1 55 - -
Sto11g0560 188 SMART HOX_1 48 115 IPR001356 GO:0003677
Sto11g0560 188 ProSiteProfiles 'Homeobox' domain profile. 46 111 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g0560 Sto-Chr11 6745799 6749020 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g0560 32 177 Wox Gene Family AT3G18010 49.007 2.42e-36 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Sto11g0560 Homeodomain 7.3e-20 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto11g0560 11 6745799 6749020 Sto11g0560 11 6745799 6749020 ECH