Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g0559 ATGTTTCCAAGATTAATTCGCACCAAGCTTTTGTTCATCCTTCCTCTACCTCTATTCCTTCCGACTCTCAAATTCTCTTCACACACCCAAAGGCTTATACACCAAGAGAAGTTTTTAACCAAAGAAGCCTTTACAAAACTCTTGAAATCATGTGCTTCGAATTCATTTCAACTCAAACAAATCCATGGCCTCCTCGTCACATCAGGTCTCTCTATCAAGAACGGCCTTATCACTCATCTTCTCACCAACTTCATTGCATTGGGTGACTTGTCTTATGCGCGCCAACTGTTCGATGAAATGCATAAACCACGAACCTTCTTATGGAACACCCTGATCAGAGGTTATGTGAGAAATGACCTTCACAATGAAGCTGCTTCCATTTATAAGCAAATGCACCTTCTTGGGGTTCGTCCTGATGCATTCACATTTCCGTTCGTGATTAAGGCTTGTACTGAGCTTATTGAATTGAGAGCTGCGGGTTCTACTGCGCATGCCCAGGTGGTGAAATATGGGCTAGATTTTGTTGCAGAGGTAAGGACTGAGTTAATGATAATGTATGTAAAACTTGGAGAACTGGgttttgctgatttcttgtttaggACCATGGTTGAGAAAGATTTAGTAGCTTGGAATGCTTTTATTGCAGCATGTGCTCAGAATGGATGTGGTATTAAGGCTCTTTCTTTGTTTCGTGAAATGGGTTCATCTGGAATTCAGCCTGATGCTGTGACTTTAGTGAGTGCCCTTTCTGCTTGTGGTCAATTAGGGTGTTCGGATATTGGGGAGGAAGTTTATGATATTGCAAGAGAAGAAGGGATTGATTGCAACATAATTGTTGATAATGCAAGGCTAGACATGCATGTGAAATGTGGTAATATTGAGGTTGCAACAAAACTATTTGACGAAATTCGCCACAGGAATATTATTTCGTGGAGTACTATGATTGTAGGATATGCTATTAATGGGGAAAGTGGAAAGGCATTATCCTTATTTTCTAGGATGCAAAGGGATGGATTGCGACCAAACCATGTTACATATCTAGGGGTTTTGTCAGCTTGTAGCCATGCTGGACTAGTGAGCCAAGGCTGGAGATATTTTAATCGGATGTCTCAGTCAAATGATGACAACATCAAACCTAGGATAGAACATTATGCTTGCATGGTTGATCTTCTTGGCCGTTCAGGACGTCTTGAAGAGGCTTATAACTTCATCAGAGCTATGCCTATTGAGCCAGACTCAGGAGTGTGGGGAGCTCTATTGGGTGCCTGTGCTAAAATCCAAAACTTGGAATTGGGCCAACTTGCTGCAGATCGTCTTTTTGAATTAGCTCCTGATGTTGCTTCATACCATGTTCTAATGTCAAATATGTATGCATCTGCTGGGAGGTGGGATTTTGTTAACAAGTTGAGGCAGAGGATGAGGAAGAAGGGTGTTAGGAAAATAGCTGCATATAGCTCAGTTGAGTTTAATGGTGATTTCCATGTTTTCTATGGGGGAGATAGGTCACATCCACAGTCAGAGATTATATACGAAAAGTTGGACAGTTTATTTAAACAAATGAAGAGTATGGGTTACAATTCAAAGACCAATTCTGTGTACCATGATGTGGAATTGGAAGAAAAGGAAGTGATGCTCAGCACTCACAGTGAAAAACTGGCCATTGCTTTTGCTTTGATAAATGTAGGGCCAGAACACCCCATCAGAGTGGTGAAGAACTTGAGGATATGTGATGACTGCCATACTTTCTCTAAATTTGTCTCCAAAATTTCATTGAGAGATATAATTATGAGAGATAAAATTCGTTTTCATCATTTTAGAAATGGAGTTTGTTCATGTAAGGATTTCTGGTGA 1851 0.4009 MFPRLIRTKLLFILPLPLFLPTLKFSSHTQRLIHQEKFLTKEAFTKLLKSCASNSFQLKQIHGLLVTSGLSIKNGLITHLLTNFIALGDLSYARQLFDEMHKPRTFLWNTLIRGYVRNDLHNEAASIYKQMHLLGVRPDAFTFPFVIKACTELIELRAAGSTAHAQVVKYGLDFVAEVRTELMIMYVKLGELGFADFLFRTMVEKDLVAWNAFIAACAQNGCGIKALSLFREMGSSGIQPDAVTLVSALSACGQLGCSDIGEEVYDIAREEGIDCNIIVDNARLDMHVKCGNIEVATKLFDEIRHRNIISWSTMIVGYAINGESGKALSLFSRMQRDGLRPNHVTYLGVLSACSHAGLVSQGWRYFNRMSQSNDDNIKPRIEHYACMVDLLGRSGRLEEAYNFIRAMPIEPDSGVWGALLGACAKIQNLELGQLAADRLFELAPDVASYHVLMSNMYASAGRWDFVNKLRQRMRKKGVRKIAAYSSVEFNGDFHVFYGGDRSHPQSEIIYEKLDSLFKQMKSMGYNSKTNSVYHDVELEEKEVMLSTHSEKLAIAFALINVGPEHPIRVVKNLRICDDCHTFSKFVSKISLRDIIMRDKIRFHHFRNGVCSCKDFW 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g0559 616 Pfam PPR repeat 384 407 IPR002885 -
Sto11g0559 616 Pfam E+ motif 496 520 IPR046849 -
Sto11g0559 616 Gene3D Tetratricopeptide repeat domain 164 271 IPR011990 GO:0005515
Sto11g0559 616 Gene3D Tetratricopeptide repeat domain 373 550 IPR011990 GO:0005515
Sto11g0559 616 PANTHER BNAC07G48870D PROTEIN 39 609 - -
Sto11g0559 616 Pfam E motif 428 488 IPR046848 -
Sto11g0559 616 Pfam DYW family of nucleic acid deaminases 524 616 IPR032867 GO:0008270
Sto11g0559 616 Pfam PPR repeat family 103 150 IPR002885 -
Sto11g0559 616 Pfam PPR repeat family 307 354 IPR002885 -
Sto11g0559 616 Pfam PPR repeat family 205 252 IPR002885 -
Sto11g0559 616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 445 480 IPR002885 -
Sto11g0559 616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 206 240 IPR002885 -
Sto11g0559 616 Gene3D Tetratricopeptide repeat domain 30 163 IPR011990 GO:0005515
Sto11g0559 616 Gene3D Tetratricopeptide repeat domain 304 372 IPR011990 GO:0005515
Sto11g0559 616 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 39 609 - -
Sto11g0559 616 TIGRFAM PPR: pentatricopeptide repeat domain 208 242 IPR002885 -
Sto11g0559 616 TIGRFAM PPR: pentatricopeptide repeat domain 309 342 IPR002885 -
Sto11g0559 616 TIGRFAM PPR: pentatricopeptide repeat domain 107 140 IPR002885 -
Sto11g0559 616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 104 138 IPR002885 -
Sto11g0559 616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 307 341 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g0559 Sto-Chr11 6733987 6735837 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g0559 59 616 Glycoside Hydrolase AT3G49170 39.223 3.01e-138 422
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto11g0559 11 6733987 6735837 Sto11g0559 11 6733987 6735837 ECH