Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g0502 ATGAAGAGAGagcatcatcatcttcgtccTAACCTGGGCGAGTCTTCCATGGCTGCGAGCTCGAGTGGGAAATCGAAGCTATGGGAAGAGGAAGGCGGTGGGATGGACGAGCTTCTGGCCGTGCTTGGGTACAAGGTGAGGTCGTCGGACATGGCGGAAGTGGCCCAGAAGCTCGAGCAGCTCGAAGAAGCTATGGGTAATGTTCAGAACGGTATCTCTCAGCTTTCTTCCGAAACCGTTCATTACAACCCTTCTGATCTCTCCACCTGGCTTGAAAGCATGCTCTCTGAGCTCAACCCTTCCCAGCTCAATTTCGACCCCATGTCCTCCGCCGCCGTACCGCCGCCGTCGCTTGACGATTCCTTCTTGGCCACGGCGGAATCATCAACTATAACTTCCATTGATTTCGccgaccaccaccaccaccaccagcagAGGCATCATGTGAATCCGATGCATAAAAGCCACCAAGATAGCTTAATCTTCGaagattcttcttcttcagattACGATCTCAAAGCTATTCCGGGTAAGGCAATCTACAGCACTCAAACTCAACACCATCTTGAGTCTCCTTCTTCCAGAGAAACCAAACGCTTGAAACCCTCATCTTCCGCCTTCAACCCAGCATTGTACTCCTCCTCTCCCACTTCCTTGGGCTCCTCCTTCACCGAGTCAACTCGTCCCGTCGTCCTCGTCGACTCACAGGAGAACGGAATTCGACTCGTGCACGCATTGATGGCTTGCGCGGAAGCCGTCCACCAGAACAATTTCACCCTCGCGGAAGCTCTCGTGAAGCAGATCGGATTCCTCGCCGTGTCTCAGGCCGGAGCGATGCGAAAAGTAGCCACCTACTTCGCCGAAGCCCTAGCTCGCCGGATTTACAGACTCTACCCGGAAAACCCTCTCGACCACTCCTTCTCCGATATGCTCCAGATTCACTTCTACGAGACCTGCCCGTACCTCAAATTCGCCCATTTCACCGCGAATCAAGCCATCCTCGAAGCCTTCGAAGGCAAAAAGCGAGTCCATGTGATCGATTTCAGTATGAACCAGGGGATGCAATGGCCGGCCCTCATGCAAGCCCTCGCGCTCCGACCCGGCGGACCACCGGCGTTCCGATTGACCGGAATCGGACCTCCGGCGCCGGATAATTCCGACCACCTCCAGGAAGTAGGGTGGAAACTCGCGCAGCTAGCAGAAACCATTCACGTCGAGTTCGAATACAGAGGATTCGTCGCAAATAGCTTAGCCGATCTCGACGCTTCCATGCTCGAACTCAGACCGAGCGAGGTCGAATCCGTGGCGGTTAACTCGGTTTTCGAGCTCCACAAACTGCTGGCCCGACCGGGAGGAATCGAGAAGGTTCTTTCAGTGGTGAAGCAGATGAAGCCGGAAATAGTTACCGTCGTGGAACAAGAAGCGAACCACAACGGACCGGGTTTCCTCGACCGGTTCACGGAGTCCCTCCACTATTACTCGACGCTGTTCGACTCGCTGGAAGGCTCCGTCAACACGCAGGACAAGGTGATGTCGGAGGTTTACTTGGGGAAGCAAATCTGCAACGTGGTGGCTTGCGAAGGAGTGGACCGGATCGAGCGGCACGAGACACTGGGTCAGTGGAGGAACCGGCTGGGTTCGGCGGGTTTCAGACCGGTTCACCTGGGTTCAAACGCGTTCAAGCAAGCGAGCATGCTTTTGGCTCTCTTCGCCGGAGGAGACGGCTATAGAGTGGAAGAGAACAATGGGTGTCTCATGCTGGGTTGGCACACTCGGCCGTTAATCGCCACCTCGGCTTGGCGACTCGGTGATAGACCGGTCCTGATGcacagaaaattaattaatattagaatTAGAGGCAGAGAGGCTGATGAGCATGTGTTTCTTGTTCCTCACATCTGA 1902 0.5263 MKREHHHLRPNLGESSMAASSSGKSKLWEEEGGGMDELLAVLGYKVRSSDMAEVAQKLEQLEEAMGNVQNGISQLSSETVHYNPSDLSTWLESMLSELNPSQLNFDPMSSAAVPPPSLDDSFLATAESSTITSIDFADHHHHHQQRHHVNPMHKSHQDSLIFEDSSSSDYDLKAIPGKAIYSTQTQHHLESPSSRETKRLKPSSSAFNPALYSSSPTSLGSSFTESTRPVVLVDSQENGIRLVHALMACAEAVHQNNFTLAEALVKQIGFLAVSQAGAMRKVATYFAEALARRIYRLYPENPLDHSFSDMLQIHFYETCPYLKFAHFTANQAILEAFEGKKRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAPDNSDHLQEVGWKLAQLAETIHVEFEYRGFVANSLADLDASMLELRPSEVESVAVNSVFELHKLLARPGGIEKVLSVVKQMKPEIVTVVEQEANHNGPGFLDRFTESLHYYSTLFDSLEGSVNTQDKVMSEVYLGKQICNVVACEGVDRIERHETLGQWRNRLGSAGFRPVHLGSNAFKQASMLLALFAGGDGYRVEENNGCLMLGWHTRPLIATSAWRLGDRPVLMHRKLINIRIRGREADEHVFLVPHI 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g0502 633 MobiDBLite consensus disorder prediction 181 223 - -
Sto11g0502 633 Pfam GRAS domain family 242 601 IPR005202 -
Sto11g0502 633 MobiDBLite consensus disorder prediction 139 158 - -
Sto11g0502 633 Pfam Transcriptional regulator DELLA protein N terminal 36 102 IPR021914 -
Sto11g0502 633 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 17 602 IPR005202 -
Sto11g0502 633 SMART DELLA_2 36 108 - -
Sto11g0502 633 MobiDBLite consensus disorder prediction 198 223 - -
Sto11g0502 633 ProSiteProfiles GRAS family profile. 233 601 IPR005202 -
Sto11g0502 633 Gene3D - 34 98 IPR038088 -
Sto11g0502 633 PANTHER DELLA PROTEIN GAI1-RELATED 17 602 IPR030006 GO:0003712|GO:0005634
Sto11g0502 633 Coils Coil 51 78 - -
Sto11g0502 633 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g0502 Sto-Chr11 6280626 6284967 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g0502 1 602 GRAS Transcription Factor Family AT2G01570 67.252 0.0 787
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Sto11g0502 GRAS 8.9e-139 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto11g0502 11 6280626 6284967 Sto11g0502 11 6280626 6284967 ECH