Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g0260 ATGCACAAGCGAAGACACAAGGTGCCTTGGAAATTGGTAAAGAAGGAGACGAGTAGTAGCAGTAATAATAATACTAGTAGTAGTTGCAGTACACAGCAGGAGGTGGTGAAGAAGAAGGTATTTGTGTGCCCTGAGCCTTCTTGTCTTCACCACAATCCCTCTCATGCGCTTGGCGATCTTGTGGGCATCAAGAAGCATTTCAGGAGAAAGCATAGCGATCACAAGCAGTGGGTTTGCCAAAAGTGCTCCAAAGCCTATGCTGTTCACTCCGATTTCAAAGCACACCTCAAAACCTGCGGTACCAGAGGCCATTCCTGTGACTGTGGTCGTGTCTTCTCCAGAGTAGAGAGTTTCATAGAACACCAAGATGCGTGCAGTGTTGGGCGGTTGGGAGGAGGCGATCAGTCACATGCAACAACAATAGCTCAGCCAGCAATTTCTTCAAGAACAGCTTCAAGCACAAGCCCTTCTAGTGAACCCAATATAAACATAGTACCTATTCCACCATTACTACAAGGCTTTCCTTTGACAATAAGACCACTACCTCCTGCTCCAACCGCTACTACCGCTACCACTACTACTATTCTAGATGAGCTCCGGCTCCTGCGTTGTTCTTCGTTGGACATTAATCACGAAAGCGAGACCCGTTTGAAGCTTTCGTTAGGGTCATGCAGTAACAATAATCATAATAAGAGTAAGGGTAAGAGTaaaagtagtagtagtagtcgTAATAATGGAGTGGAAGCTGTGGCGCGGTTGAAAGAGTGTGCTAGCGAGGAGATGAAGTTGGCGATGGAGGAAAAGGCGTACGGGGAAGAGGCGAGAAGAGAGGCGAAGCGTGAGATAGAGATGGCCGAGTTCGAGTTCGGGAAAGCGAAGAGATTAAGGAAGGAAGCAGAAGAGGAAGTTCACAAGGCCGAGGCTTTGAAGAAGCAAGCCATGAAGAAGATTAGCTCTACGCTCTTGCAAATTACTTGCCAAGCTTGCAAGCAACAGTTCCAATCTTCGATTGTTGGGGTTTATTCTGAAGAGACATCAATGGTCATGAGCGACATGTCCTCCCCTACCACTGAAGGGGAAGGGGAATga 1089 0.4646 MHKRRHKVPWKLVKKETSSSSNNNTSSSCSTQQEVVKKKVFVCPEPSCLHHNPSHALGDLVGIKKHFRRKHSDHKQWVCQKCSKAYAVHSDFKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACSVGRLGGGDQSHATTIAQPAISSRTASSTSPSSEPNINIVPIPPLLQGFPLTIRPLPPAPTATTATTTTILDELRLLRCSSLDINHESETRLKLSLGSCSNNNHNKSKGKSKSSSSSRNNGVEAVARLKECASEEMKLAMEEKAYGEEARREAKREIEMAEFEFGKAKRLRKEAEEEVHKAEALKKQAMKKISSTLLQITCQACKQQFQSSIVGVYSEETSMVMSDMSSPTTEGEGE 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g0260 362 MobiDBLite consensus disorder prediction 221 247 - -
Sto11g0260 362 MobiDBLite consensus disorder prediction 1 30 - -
Sto11g0260 362 MobiDBLite consensus disorder prediction 143 162 - -
Sto11g0260 362 MobiDBLite consensus disorder prediction 14 30 - -
Sto11g0260 362 SUPERFAMILY beta-beta-alpha zinc fingers 75 122 IPR036236 -
Sto11g0260 362 PANTHER OS03G0310200 PROTEIN 1 362 IPR039288 GO:0009630
Sto11g0260 362 MobiDBLite consensus disorder prediction 143 161 - -
Sto11g0260 362 Coils Coil 282 316 - -
Sto11g0260 362 PANTHER ZINC FINGER PROTEIN SHOOT GRAVITROPISM 5 1 362 - -
Sto11g0260 362 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 29 - -
Sto11g0260 362 Gene3D Classic Zinc Finger 62 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g0260 Sto-Chr11 3385820 3388518 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g0260 1 362 C2H2 Transcription Factor Family AT2G01940 50.532 3.10e-105 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sto11g0260 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto11g0260 11 3385820 3388518 Sto11g0260 11 3385820 3388518 ECH