Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g2870 ATGCCTAACCAATTTCAGTTTCAATTCCACTCACACACAGTAGAAACATCTACTCACACAATGAGAACCTATATCCAATTCCtcttctctctccttctcttcaGCCTCCTCTGCTTCTTCGTACACACCAAATCCATCATCGAACCATGTACCTCCTCTTCCTCCTGCCCTTCCCTCCTCTCCTACCTCCTTCCCTACGACTCCAAGCTCTCCCAAATCGCCTCTCGCTTCCACGTCAACATCTCCGACATCCTCGCCGCCAACTCCGTCCAGTTCCCGATCGCCGCCGCCGCCGATCACATCCTCCCTTCCAATTCCGCCGTCAAGATCCCGATCTCCTGCCCCTGCGTCGACGGAATCCGGAGGTCGATGTCGGCGATCTACACCGTCGAGGCGTCGGACACGGTGGAGTCCATATCGGATGGTTACGGCGGGCTGGCGAGTGCGGAGCAGATCGCGAGCGTGAACGGCATCAATGCGACGCACCGTTTGATGAACGGCGAGACGGTGGTGATTCCGTTGCCGTGTACGTGCTTGAACAATGTGTGGAATGGGGAGACGACGGTGTATATGTCGTATGTGGTGAGGGAAGGGGAGAGGTTGGGGAGTATAGCGGCGGCTTCGGCCACGACGGTTTCGGACTTGGAGGCTATAAATGGGCTGGGCCAAGCACTGGTTGGCCCAGGAGATGTTATTGCTGTACCTATTGCAGCATGTTCTTCGGCAAATCTGAATTGGTACAACGAGACTCTGATTGTCCCAAATGGCTCTTATGCTTTAACCGCTAGCAATTGCATAAAATGCTCTTGTGGCCCAATTGATCTGAGGCTGCAATGTAGTCCCTCTGGTTTGGACGTGGCGTGTTATAATTTAGAGTGCAAAGACTCAAAGCTAGTCATTGGGGATGAGTACGTGACACATTCAAAATATGGTTGTAATGTCACACTGTGTCTTTATCGTGGCCACAGAGGTGGTAAGATTCTCAGAAGGTACGCTAAATCAATCTCTTTGATTTAA 1017 0.5093 MPNQFQFQFHSHTVETSTHTMRTYIQFLFSLLLFSLLCFFVHTKSIIEPCTSSSSCPSLLSYLLPYDSKLSQIASRFHVNISDILAANSVQFPIAAAADHILPSNSAVKIPISCPCVDGIRRSMSAIYTVEASDTVESISDGYGGLASAEQIASVNGINATHRLMNGETVVIPLPCTCLNNVWNGETTVYMSYVVREGERLGSIAAASATTVSDLEAINGLGQALVGPGDVIAVPIAACSSANLNWYNETLIVPNGSYALTASNCIKCSCGPIDLRLQCSPSGLDVACYNLECKDSKLVIGDEYVTHSKYGCNVTLCLYRGHRGGKILRRYAKSISLI 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g2870 338 ProSiteProfiles LysM domain profile. 126 172 IPR018392 -
Sto10g2870 338 SUPERFAMILY LysM domain 191 235 IPR036779 -
Sto10g2870 338 CDD LysM 192 234 IPR018392 -
Sto10g2870 338 CDD LysM 127 172 IPR018392 -
Sto10g2870 338 SMART LysM_2 192 235 IPR018392 -
Sto10g2870 338 SMART LysM_2 70 111 IPR018392 -
Sto10g2870 338 SMART LysM_2 127 173 IPR018392 -
Sto10g2870 338 ProSiteProfiles LysM domain profile. 191 234 IPR018392 -
Sto10g2870 338 Gene3D LysM domain 123 181 IPR036779 -
Sto10g2870 338 Pfam LysM domain 193 235 IPR018392 -
Sto10g2870 338 Pfam LysM domain 70 92 IPR018392 -
Sto10g2870 338 Pfam LysM domain 128 173 IPR018392 -
Sto10g2870 338 Gene3D LysM domain 182 244 IPR036779 -
Sto10g2870 338 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 28 335 - -
Sto10g2870 338 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 1 28 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g2870 Sto-Chr10 38751984 38754172 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g2870 27 335 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 44.373 9.96e-82 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g2870 - - aprc:113855794 396.356