Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g0618 ATGGTCTTCCCTTCTCTTCCACTCTATCATCTAGATCCACCACCCAACTGGGCTCATCagCAACCTAATCAGCAGGATCCAGTAGTAGTAATTCCCACCCAGAATGATCCCCAGGTTCCGCCTCCTCCAACGGCTGCCGGGGGCGGATCGAGCAGGCGGGCGGCGGTATCGATGGCGGACCGGGCCCGGCTGGCGAAAATATCGTCCGAACCGGATCAAGGCGCCCTGAAATGCCCGCGGTGCGAATCCACGAACACCAAGTTCTGCTACTACAACAACTACAGCCTCTCGCAGCCTCGCCACTTCTGCAAGGCGTGCCGCAGGTACTGGACCCGCGGCGGCGCCTTGAGGAACGTGCCGGTCGGGGGCGGGTGCCGGAGGAAGCACAGGAGATCTTCCaacaaaacaaaaccaaaacccaaagaAATAATATCATCCTCATCAGCTCCAAATAATAGTAATTCTTTTAGTACTAGCTTCTGCCCTAGCCATCATCAATTGCTCTTCCCTCCTCCTACTACTACTGCtacaaacgacgtcgtttcacTCCCTGGGGGCATCAATGGGATGATGCAATTTGGAgcaacaaattataatattaatggaGCCTCCTCTTCTATCTCTATGATATCATCAAATCATCCGAATGCATTTGTTTCGagtctgccacgtcatcatcatcatcaatttcCTCCGTTTTTCTCTAATTTGGAGTTGGAAGCAGTACCATCAATGGAGTTATTACATGATAATCATGGTGATGATCAGTTTGAAAGCTCAATTAGGAGTAATATTAGTGGTGCATTACTGTATTCTGGTCTTAATGGTGGAATTATAagtgctactactactactcctAGTACAATTAAAATGGAACAAAAtgttttgggtcaaaatttcTTGGTTGCAAATAATAGTGATCACAATAATATTGCATGGAATATTATTGACAATAATAGTATTCCCACTTTCATCACCTCTTCTAATTCCACCACTCATCTCTTGTGA 1008 0.4117 MVFPSLPLYHLDPPPNWAHQQPNQQDPVVVIPTQNDPQVPPPPTAAGGGSSRRAAVSMADRARLAKISSEPDQGALKCPRCESTNTKFCYYNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRKHRRSSNKTKPKPKEIISSSSAPNNSNSFSTSFCPSHHQLLFPPPTTTATNDVVSLPGGINGMMQFGATNYNINGASSSISMISSNHPNAFVSSLPRHHHHQFPPFFSNLELEAVPSMELLHDNHGDDQFESSIRSNISGALLYSGLNGGIISATTTTPSTIKMEQNVLGQNFLVANNSDHNNIAWNIIDNNSIPTFITSSNSTTHLL 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g0618 335 Pfam Dof domain, zinc finger 75 130 IPR003851 GO:0003677|GO:0006355
Sto10g0618 335 MobiDBLite consensus disorder prediction 13 58 - -
Sto10g0618 335 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 30 316 IPR045174 GO:0003700|GO:0006355
Sto10g0618 335 MobiDBLite consensus disorder prediction 120 157 - -
Sto10g0618 335 MobiDBLite consensus disorder prediction 139 157 - -
Sto10g0618 335 MobiDBLite consensus disorder prediction 17 32 - -
Sto10g0618 335 ProSitePatterns Zinc finger Dof-type signature. 78 114 IPR003851 GO:0003677|GO:0006355
Sto10g0618 335 ProSiteProfiles Zinc finger Dof-type profile. 76 130 IPR003851 GO:0003677|GO:0006355
Sto10g0618 335 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 30 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g0618 Sto-Chr10 5334412 5335598 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g0618 59 127 C2C2-Dof Transcription Factor Family AT2G28810 84.058 1.82e-38 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Sto10g0618 zf-Dof 5.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g0618 - - pper:18786757 182.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0176 12 1046842 1047847 Sto10g0618 10 5334412 5335598 ECH
Sto7g1156 7 9589051 9595685 Sto10g0618 10 5334412 5335598 ECH
Sto10g0618 10 5334412 5335598 Sto10g0618 10 5334412 5335598 ECH