Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g0574 atgctcttcttcttcctctctccctCCTTctccctcttcatcttctcctctCTCCTCCATACGACGTCGTCCTCATCATCCCACGCCCCCACCCCCACTCTCCCCATATGCCTCACTAACTTCGACTGCGGCACCCTTCAAAACATCCCCTACCCCTTCACCGGCGGCCACCGTCCCTCCCGCTGCGGCCCGCCGGAGTTCCGAATAACCTGCTCGAGCGCCGTTCCGTTACTGAACATCTCCTCCGTCAGTTACCGAATCCTCCGACTCGACCCTGTCGGGCGCGTTCTCACCTTAGCCCGTACGGACCTCTGGAACGAGACGTGTACTCGGAACTTCGTCAATTCCACGTTCGATTCCGTTAACTTCGGCTACGGCTCCGGCAACGAGAATCTCACTTTGGTTTATGGGTGTAGCCGGTCCCCTGAGATTCACACTAGGCCGGCGAATCTGTTCGAGTGTGAGTTTGAGGGGAATCGAAACGATTCGTATTCTTGGGTTGGTCCGTTACCGGAGGACCCTGTTCTTGCTATTGTTGATTGCGTTACTCGAGTTGAGGTGCCTATTCTTCAGGGTGAAGCGAGGAGGTTCTTGAGTAATCGGTCGTTGCTTAGGGAAGTTTTGATGAGTGGGTTTAATGTGAATTATAGCAGTCCTTATGAAAACGTGTGCCTCAAATGTGTTGGGTATGGTggccgagtggatttgatgacGAATCCGGGATACCCATTTGCATTTGTGGCGATCGCTTGTGTCCCTCAGAAAAAAACTAGCTCAAAAGGCGTTATAGCAGGCGTTGCTACTGGAGTTGCTGCTGCTGTTTGCATTCTTGTTGTGGGTGGTGTGTGTTTTGTGGTAAAACGAAGGAAAATAATTGCACAACAGTCAAAAACCAAGGACCTCTTTTTGCCTCCTTCAAGCAGAGGCCTTGCTACCTCTACAACAAAAACGTCTCAGAGTGTCACATCTTACAACACCTCGAGGTCTGAATCTGTGCAGCAGAGTTTCTTCTATGGGGTTAAGGTGTTTAGCTATGCTGAACTAGAGGAAGCTACTAAAAATTTTGATCCTTCCGTGGAACTTGGTAATGGAGGTTTTGGCACTGTTTACTATGGCACTCTCACTGATGGACGTGCAGTTGCAGTGAAACGCCTCTACGAAAGCAATCTGAAACGCGTTGAGCAATTCAAGAATGAAGTTGAGATTCTAGCTCGAATTCGGCACAGAAACCTGGTTGAACTCTATGGATGCACCTCTAGACACAGCCAAGAGCTTCTCCTTGTTTATGAGTACATCCCTAATGGAACAGTGGCCGATCACCTCCATGGCAACCGAGCAAAATCCGCTTTGCTTCCATGGTCCACACGGCTGAACATCGCGGTAGAAACAGCAGAGGCTCTATCCTACCTCCACAAGTCAGATGTCATACACCGCGACGTCAAGACCAACAACATCCTTCTAGACAGCGAATTCTGCGTGAAGGTCGCTGATTTTGGTCTCTCAAGGTTGTTCCCTAATGATGTCACTCATGTGTCAACTGCTCCACAAGGAACACCTGGGTATGTTGATCCTGAGTATTACCAGTGCTACCAACTCACTGATAAAAGTGATGTCTACAGCTTTGGGGTGGTCTTAGTTGAGCTCATATCATCATTAGAAGCCGTGGATATCAATAGGCACCGCCATGATATAAACTTAGCCAATATGGCTGTGAATAAGATTCAGAACCATGCGGTGCATGAGTTGGTTGATCCGTTTCTTGGGTTTGAAAGAGACGATGGTGTGAGGAAGATGACAACCGCAGTGGCAGAATTGGCCTTTAGGTGCTTGCAGCAAGACGGAGACATAAGACCCTCCATGGATGAAGTGGTGGAGGTGTTGAGAGGAATCCAGAAAGAAGAGTGTGGTGGAGGACATGAAGGAGGAGAGAAagtgaataataataatgttaggAGTACAGAAGAAGTTGTGCTTCTGAAAAATGATGGCCATCCCTTGTTTTCACCTGATTCTGTTGCTGATAACCACTGGGTTAGCTCCTCTACCACTACATCTAATTCCTCATAG 2067 0.4664 MLFFFLSPSFSLFIFSSLLHTTSSSSSHAPTPTLPICLTNFDCGTLQNIPYPFTGGHRPSRCGPPEFRITCSSAVPLLNISSVSYRILRLDPVGRVLTLARTDLWNETCTRNFVNSTFDSVNFGYGSGNENLTLVYGCSRSPEIHTRPANLFECEFEGNRNDSYSWVGPLPEDPVLAIVDCVTRVEVPILQGEARRFLSNRSLLREVLMSGFNVNYSSPYENVCLKCVGYGGRVDLMTNPGYPFAFVAIACVPQKKTSSKGVIAGVATGVAAAVCILVVGGVCFVVKRRKIIAQQSKTKDLFLPPSSRGLATSTTKTSQSVTSYNTSRSESVQQSFFYGVKVFSYAELEEATKNFDPSVELGNGGFGTVYYGTLTDGRAVAVKRLYESNLKRVEQFKNEVEILARIRHRNLVELYGCTSRHSQELLLVYEYIPNGTVADHLHGNRAKSALLPWSTRLNIAVETAEALSYLHKSDVIHRDVKTNNILLDSEFCVKVADFGLSRLFPNDVTHVSTAPQGTPGYVDPEYYQCYQLTDKSDVYSFGVVLVELISSLEAVDINRHRHDINLANMAVNKIQNHAVHELVDPFLGFERDDGVRKMTTAVAELAFRCLQQDGDIRPSMDEVVEVLRGIQKEECGGGHEGGEKVNNNNVRSTEEVVLLKNDGHPLFSPDSVADNHWVSSSTTTSNSS 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g0574 688 CDD STKc_IRAK 361 630 - -
Sto10g0574 688 SMART serkin_6 355 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto10g0574 688 Gene3D Phosphorylase Kinase; domain 1 324 431 - -
Sto10g0574 688 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 12 687 IPR044652 -
Sto10g0574 688 MobiDBLite consensus disorder prediction 669 688 - -
Sto10g0574 688 ProSitePatterns Protein kinases ATP-binding region signature. 361 383 IPR017441 GO:0005524
Sto10g0574 688 SUPERFAMILY Protein kinase-like (PK-like) 329 631 IPR011009 -
Sto10g0574 688 MobiDBLite consensus disorder prediction 673 688 - -
Sto10g0574 688 PANTHER WALL ASSOCIATED KINASE-LIKE PROTEIN 12 687 - -
Sto10g0574 688 ProSiteProfiles Protein kinase domain profile. 355 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto10g0574 688 Gene3D Transferase(Phosphotransferase) domain 1 432 636 - -
Sto10g0574 688 Pfam Protein tyrosine and serine/threonine kinase 360 627 IPR001245 GO:0004672|GO:0006468
Sto10g0574 688 ProSitePatterns Serine/Threonine protein kinases active-site signature. 475 487 IPR008271 GO:0004672|GO:0006468
Sto10g0574 688 Pfam Wall-associated receptor kinase galacturonan-binding 42 99 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g0574 Sto-Chr10 4842466 4845533 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g0574 323 688 Receptor kinase-like Gene Family AT1G25390 61.111 2.02e-149 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Sto10g0574 PK_Tyr_Ser-Thr 2.3e-48 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g0574 10 4842466 4845533 Sto10g0574 10 4842466 4845533 ECH
Sto8g2182 8 14371932 14377624 Sto10g0574 10 4842466 4845533 ECH
Sto11g0672 11 7765807 7769572 Sto10g0574 10 4842466 4845533 ECH
Sto6g2737 6 34511181 34519735 Sto10g0574 10 4842466 4845533 ECH